JMPer Cable

Latest Posts

• Genetic Association with JMP Genomics, Part 4: Basic Linkage Mapping

  The Basic Linkage Mapping Workflow in JMP Genomics creates linkage maps using genetic marker data. The workflow includes output from the Recombination and Linkage Groups, Linkage Map Order, and Linkage Map Viewer. This includes calculation of recombination frequencies, testing for segregation distortion, assigning linkage groups to sets of markers, generating visualized linkage maps, and reorderin...

  Daniel_Genung

  JMPer Cable |

  Jun 18, 2019 1:01 PM

  5031 views | 0 replies
  

• Saving graphs, tables and reports in JMP

  Saving and sharing your output from JMP is easy. Here are some simple ways to save both tabular output and/or graphs in JMP.

  MaryLoveless

  JMPer Cable |

  Jun 14, 2019 5:41 AM

  93022 views | 19 replies
  

• How to make Harvey Balls in JMP in 3 ways

  OK, let's get something out of the way right from the start. There are so many jokes... so very many jokes... that I could make about this topic. But, I'm not going to make them. I'm going to take the high road. Not because I want to, if you've read any of my other articles, you'll know I revel in wordplay and corny jokes. No, I'm going to take the high road because I'm reasonably sure my editors ...

  MikeD_Anderson

  JMPer Cable |

  Jun 13, 2019 12:04 PM

  8722 views | 1 replies
  

• Genetic Association with JMP Genomics, Part 1: Importing and Cleaning Data

  In the Genetic Association with JMP Genomics series, we will discover numerous methods for associating genetic markers with traits of interest. Before starting any analyses, we need to import and clean our data. In this guide, we download a data set from GEO, bring it into JMP, and transform it into an ideal form for analysis. In this example, we explore ~22,000 genetic markers in a sample of 474 ...

  Daniel_Genung

  JMPer Cable |

  Jun 13, 2019 7:54 AM

  5180 views | 2 replies
  

• Genetic Association with JMP Genomics, Part 2: Basic Genetics Workflow (Case-Control)

  JMP Genomics has analytical pipelines or Workflows to perform a series of analyses on a data set. The Basic Genetics Workflow is a quick and easy method for gaining a deeper understanding of your data before beginning a more in-depth analysis. This workflow recodes marker data to a numeric format, imputes missing genotypic data, and creates data subsets based on minor allele frequency (MAF), missi...

  Daniel_Genung

  JMPer Cable |

  Jun 12, 2019 9:24 AM

  5265 views | 0 replies
  

• Genetic Association with JMP Genomics, Part 3a: Marker Based Relationship Matrix

  In JMP Genomics, the Relationship Matrix analysis is used for computing and displaying relatedness among lines. The Relationship Matrix tool estimates the relationships among the lines using marker data, rather than pedigree information (Kinship Matrix tool), and computes the relationship measures directly while also accounting for selection and genetic drift. The Relationship Matrix computes one ...

  Daniel_Genung

  JMPer Cable |

  Jun 12, 2019 9:21 AM

  6628 views | 0 replies
  

• Genetic Association with JMP Genomics, Part 3b: Population Structure Matrix

  Population structure is genetic similarity across large groups of individuals or lines. In preparation for association mapping, population structure should be assessed. Like familial relatedness, population structure can be incorporated into an association mapping analysis. In QK association analysis, population structure is modeled with a Q matrix, and familial relatedness is modeled with a K mat...

  Daniel_Genung

  JMPer Cable |

  Jun 12, 2019 9:18 AM

  5979 views | 0 replies
  

• Genetic Association with JMP Genomics, Part 3c: Q-K Mixed Model

  Q-K association analysis was developed to perform association mapping while controlling for population structure and/or familial relatedness. The “Q-K” in this name refers to the two kinds of information that get included in the model. The Q matrix contains information about population structure (See Part 3b: Population Structure Matrix). The K matrix contains more fine-grained information about r...

  Daniel_Genung

  JMPer Cable |

  Jun 12, 2019 9:17 AM

  6957 views | 0 replies
  

• Genetic Association with JMP Genomics, Part 3d: Q-K Mixed Model Workflow for Genetic Association

  There two ways to run a Q-K analysis in JMP Genomics. One example uses the Q-K Mixed Model process, which was outlined in the Genetic Association with JMP Genomics, Part 3c: Q-K Mixed Model, and is a general tool that has a great deal of flexibility, but requires you to construct the input data set yourself. A simpler option is the Genetics Q-K Analysis Workflow, which performs all the steps for t...

  Daniel_Genung

  JMPer Cable |

  Jun 12, 2019 9:16 AM

  4651 views | 0 replies
  

• To update JMP or not? That is the question

  JMP software administrators are often given the task in an organization to manage the receipt of the software. One question I often get is when do I need to upgrade our software? This question often is precipitated by our announcement of a new maintenance release of the software being available or when we announce a new version of the software.

  stan_koprowski

  JMPer Cable |

  Jun 11, 2019 1:20 PM

  4583 views | 0 replies
  

• Leptokurtosiphobia: Irrational Fear of Non-Normality

  JMP developers get frequent requests to implement a test for residual normality as a convenience feature for our fitting platforms. This 2004 study tends to support NOT implementing a test for normality in the fitting platforms. Rather, including this feature might only encourage JMP users to worry about something they they either can’t see or that doesn’t matter.    

  gail_massari

  JMPer Cable |

  Jun 4, 2019 8:08 AM

  3391 views | 0 replies
  

• 一圖勝千言，聊聊企業招聘和人才需求那些事

  在剛剛過去的金三銀四招聘季，眾多國內外的企業都使用了渾身解數來做各種推廣，一時間群雄逐鹿，各領風騷，花費了很多人力，物力和財力尋找雇員。但雇主和應徵者之間的需求差距常常困擾著企業HR和眾多應徵者。今天我們將從資料層面給出一些線索，拋磚引玉，供大家參考和探討，並借助於JMP的視覺化分析更快地幫助供需雙方做決策。

  Ritalv

  JMPer Cable |

  May 20, 2019 6:31 PM

  3430 views | 0 replies
  

• Prompting for columns, totally modally

  Prompting the user to select columns is a very common task for a JMP script. But how do you get started? What things should you consider? In this post, I will discuss ways to create modal windows to prompt users to select columns that will be used in an analysis. In addition, we will look at methods to extract the user’s selections from these windows.

  Wendy_Murphrey

  JMPer Cable |

  May 3, 2019 7:03 AM

  7626 views | 4 replies
  

• One-click export to Microsoft PowerPoint

  Here's how you can export JMP reports directly into the .pptx file format.      

  MaryLoveless

  JMPer Cable |

  May 1, 2019 5:35 AM

  23463 views | 13 replies
  

• Accessing JMP reports from your mobile device

  The developers at JMP are always thinking of new ways for you to communicate the results of your analyses with others. That is the spirit behind the new JMP Public and soon-to-be-released JMP Live. Visuals and reports created in JMP and published to JMP Public (available to anyone on a mobile device with a Wi-Fi connection) or JMP Live (secure for private access) can be accessed remotely via your ...

  HadleyMyers

  JMPer Cable |

  Apr 25, 2019 9:39 AM

  5833 views | 0 replies
  

• Graph Builder color theme add-in

  There are times where a plot produced in Graph Builder and one produced in another platform, Fit Y by X for example, will look different because the color themes differ by default. Graph Builder intentionally uses a different default color theme than the JMP Default color theme. Unfortunately, there is not a preference to set the Graph Builder color theme to apply it to all graphics within JMP. Th...

  laura_archer

  JMPer Cable |

  Apr 2, 2019 8:22 AM

  5571 views | 2 replies
  

• Unlock the hidden value of QbD with the Prediction Profiler Simulator

  Quality by Design (QbD) has been emphasized by international regulatory agencies for more than 10 years as a risk-based, flexible approach to meeting regulatory requirements. It is true that QbD provides detailed evidence of compliance; however, it is only a small portion of the value that comes from the approach. JMP provides excellent DOE and modeling tools that can involve QbD practices to prov...

  statpharmer

  JMPer Cable |

  Apr 1, 2019 7:27 AM

  5103 views | 0 replies
  

• Wash, rinse, repeat: Iteration in JMP Scripting Language

  Repetition of a function or a set of steps in the context of scripting is called iteration or looping. The JMP Scripting Language, JSL, offers several functions that iterate, including the most frequently used functions: For( ) and While( ). This article introduces features that are common to iteration functions, describes their use, and provides examples and suggestions to avoid infinite loops.  ...

  gzmorgan0

  JMPer Cable |

  Feb 27, 2019 8:45 AM

  9460 views | 1 replies
  

• Isn't JMP romantic?

  When you think of statistical quality control and JMP, what is the first word that comes to your mind?

  smorgen

  JMPer Cable |

  Feb 13, 2019 10:06 AM

  3921 views | 1 replies
  

• Is it uniform?

    If you have taken a basic course in probability and statistics you were probably introduced to the Uniform distribution. Don’t blame yourself if it isn’t foremost in your memory; the Uniform distribution doesn’t have much appeal because it describes a phenomenon with constant probability. Next time you are wondering if your data can be described by a Uniform distribution, think ‘beta’ and use th...

  gail_massari

  JMPer Cable |

  Jan 9, 2019 5:37 AM

  4903 views | 0 replies