Missing values gwas analysis
Hello All, I'm trying to run my GWAS analysis. When obtaining the results in chromosome 7, some missing values appear. I don't understand why it appears this way. Can someone help me?
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view all learning resourcesHello All, I'm trying to run my GWAS analysis. When obtaining the results in chromosome 7, some missing values appear. I don't understand why it appears this way. Can someone help me?
Hi community, this is my first post ever in a forum and also the first time I'm using DoE for experiments. I have watched the DoE Video from JMP and have a question or rather look for confirmation: I have an experiment with two continuous factors (e.g. range of pHs) and one categorical factor (e.g. type of acid). I want to use RSM but apparently, it won't work when a categorical factor is in...
Hello!I am new to the community and I would like to get some advice on the data result after completing DoE (3x3x3 full factorial) experiment. I have three factors (sodium chloride, sodium citrate, and glycine) and tested at 3 levels (0,100,200mM sodium chloride; 0,50,100mM sodium citrate; and 0,50,100mM glycine). Tested all 27 runs. The response is the %monomer intensity. Ideally, I want to achie...
Hi, I want to select all the rows that start with the word "Insert" on a column that has a very complicated name: "Aligned_bin_on_ref(ref[+/-]strand:start-end". I can select any rows using some of the other columns but the name of this one is somehow being interpreted as "code". I am also trying to use a Regex because the "values" on the column may contain more than one instance of the word "Inse...
I have now published some of the Add-ins I have written for JMP. The codes and addins (some are encrypted) can be found from this GitHub page jthi-jmp-tools (github.com) and overview can be found from jthi-jmp-tools / JMP-Tools (github.com) repository. If you have suggestions on these add-ins, you can: Comment to this postOpen an issue in correct GitHub repository related to that add-in or to gene...
Hello All, I'm trying to run my GWAS analysis. When obtaining the results in chromosome 7, some missing values appear. I don't understand why it appears this way. Can someone help me?
I have now published some of the Add-ins I have written for JMP. The codes and addins (some are encrypted) can be found from this GitHub page jthi-jmp-tools (github.com) and overview can be found from jthi-jmp-tools / JMP-Tools (github.com) repository. If you have suggestions on these add-ins, you can: Comment to this postOpen an issue in correct GitHub repository related to that add-in or to gene...
Calling JMP workflow and JSL wizards. Here's a Thursday challenge for you. The attached data set is set of power data off my running power meter. What we want to do is identify and correctly tag the 8 motifs that occur during this ~1000 point signal data set attached to this post, create a new column with function ID and write it in a way that it can be used to automate the tagging of future data...
Hello everyone, I have a question regarding JMP-Classes. I'm using custom classes to create instances as an interface for custom (sql) requests. These classes contain among other things a namespace, a window and a button. It works pretty good - however I have some generall/global classes which i also want to execute within these instances. Dummy sample for a global class: New Namespace("BASICS",
...
I have been working with a tool which utilizes mouse over hover labels (actually graphlets in this case; quite simple script to open and show image) on Graph Builder platform. I have noticed that hover label script is vanished/reset if data point is first excluded and then included back by local data filter. I am running JMP 16. Is there any option or way around trick how hover label script would ...
While taking the Exploratory Data Analysis module, it is time to practice. However, when trying to access the JMP Virtual Lab, I cannot get past the "Create User" option. JMP VIRTUAL LABTo use the Virtual Lab, please select the Create User link below. If you would prefer to use software on your own machine, please select the Download Data link below.
Create User Download Course Data Clicking the C...
Recently switched from JMP15 for Mac to JMP16 for Mac. I was surprised to see the column switcher button removed as an option in an analysis/plot window. It used to reside up top next to the local data filter button (see black circle). The option to customize it back is also missing and has been replaced by a 'properties' button. This may also prove useful but I'm new to it. To get the colum...
Hi,when I generate a summary table with the option "link to original data table" (selected by default), the two tables are linked:By selecting a row in the summary table the corresponding rows in the original table are selected.Cool.This also works for selections in Graphs and Dashboards.Very cool! Now my problem:After saving both tables to a project file, (precisely: after close & re-open the pro...
Hello. I am trying to use the EMP tool to help set guardbands to my test limits based on my gauge R and R data from a final test machine.I used 10 devices and measured these devices 5 times each, across 5 different test sites on the machine.I need to know how much to guardband my Upper and Lower specs. I am having trouble understanding how to apply the data in the EMP report. I feel like this is a...
Hi JMP community, (JMP Pro 16.0.0) I'm hoping to find out if there is a way to include lower bounds to simulated data in the Profiler platform. I have several predictors going into a model, but few data points to fit. So, in order to generate simulated ("synthetic") data, I use the Prediction Profiler platform along with the multivariate correlation structure of the data to generate thousands ...
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