JMP Genomics - P-value criteria for Basic RNA-Seq Workflow
When using the Basic RNA-Seq Workflow in JMP Genomics, how is significance defined? Although I have specified the FDR p-value adjustment, the volcano plots still graph the unadjusted p values on the y-axis. Speaking of volcano plots, how is the horizontal line determined? This value seems to fluctuate between experiments, but I cannot find any indication of what it represents. Under Output Data, i...