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  • JMP will suspend normal business operations for our Winter Holiday beginning on Wednesday, Dec. 24, 2025, at 5:00 p.m. ET (2:00 p.m. ET for JMP Accounts Receivable).
    Regular business hours will resume at 9:00 a.m. EST on Friday, Jan. 2, 2026.
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Learning Resources

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Latest Discussions

  • JMP Genomics - Collapsing Isoform Level Differential Expression Data to Gene Level

    I have an RNA-Seq data set where reads are mapped to the transcript level, resulting in multiple unique transcript identifiers sharing common gene IDs. I am performing differential gene expression in JMP Genomics at the level of transcript identifiers, but I would like to collapse that information to the gene level in a statistically meaningful way. Most of the downstream data analysis tools (gene...

    LouisAltamura LouisAltamura
    Discussions |
    Feb 22, 2021 4:44 PM
    2497 views | 4 replies

  • recreate color map from hierarchical clustering in graph builder

    Dear JMP communityThe two way cluster option in hierarchical cluster provides a really great color map that scales each column individually, such that if I have a column with high values it does not overshadow the rest of the columns. Whereas if i try to make the plot in graph builder e.g. as a heat map, the variables scale together and i lose a lot of data.since only the extreme cases show up. Th...

    ezorlo ezorlo
    Discussions |
    Feb 22, 2021 3:39 PM
    5901 views | 4 replies

  • Mixture DOE - how to limit number of ingredients in final formula?

    Dear All,I am using JMP for the first time and I'm trying to run a DOE with 6 mixture factors (A, B1, B2, B3, B4, B5) and 1 categorical factor. This is a chemical formulation and I only can use a maximum of 2 ingredients of type B, i.e., the final formula must have just 2 or a maximum of 3 ingredients (A + 1 type of B or A + 2 types of B).
    Sum of all type B must make up between 1% and 40% of the fi...

    slscolep slscolep
    Discussions |
    Feb 22, 2021 2:50 PM
    12136 views | 25 replies

  • How do I script a for loop to run oneway ANOVA over all Y columns in a data table

    I have a large data table with 10,000 different column names and a small number of rows containing replicates from 5 different sample groups, including a control group labeled "HN30".  I have a script that will run a one way ANOVA and Dunnett post-hoc mean comparisons test (i.e. Means comparison) to the control group (HN30) if I specify each Y variable one at a time. However, I don't want to type ...

    Mitch Mitch
    Discussions |
    Feb 22, 2021 2:21 PM
    3494 views | 4 replies

  • How do I make a DoE for a mix of factors I have a physical model for (custom nonlinear model) and factors I dont (traditional factorial model)

    Hello - I know you can make non-linear custom DoEs. However, I can't seem to find a source, even a theoretical discussion in a journal article, that shows how to handle a sort of hybrid model, wherein there is a physical model that is known that relates a response with one of the factors being studied, but the model does not incorporate other factors that are under study and known to affect the sy...

    ehchandlerjr ehchandlerjr
    Discussions |
    Feb 22, 2021 10:36 AM
    2862 views | 6 replies

Latest Discussions

  • JMP Genomics - Collapsing Isoform Level Differential Expression Data to Gene Level

    I have an RNA-Seq data set where reads are mapped to the transcript level, resulting in multiple unique transcript identifiers sharing common gene IDs. I am performing differential gene expression in JMP Genomics at the level of transcript identifiers, but I would like to collapse that information to the gene level in a statistically meaningful way. Most of the downstream data analysis tools (gene...

    LouisAltamura LouisAltamura
    Discussions |
    Feb 22, 2021 4:44 PM
    2497 views | 4 replies

  • How do I script a for loop to run oneway ANOVA over all Y columns in a data table

    I have a large data table with 10,000 different column names and a small number of rows containing replicates from 5 different sample groups, including a control group labeled "HN30".  I have a script that will run a one way ANOVA and Dunnett post-hoc mean comparisons test (i.e. Means comparison) to the control group (HN30) if I specify each Y variable one at a time. However, I don't want to type ...

    Mitch Mitch
    Discussions |
    Feb 22, 2021 2:21 PM
    3494 views | 4 replies

  • How do I make a DoE for a mix of factors I have a physical model for (custom nonlinear model) and factors I dont (traditional factorial model)

    Hello - I know you can make non-linear custom DoEs. However, I can't seem to find a source, even a theoretical discussion in a journal article, that shows how to handle a sort of hybrid model, wherein there is a physical model that is known that relates a response with one of the factors being studied, but the model does not incorporate other factors that are under study and known to affect the sy...

    ehchandlerjr ehchandlerjr
    Discussions |
    Feb 22, 2021 10:36 AM
    2862 views | 6 replies

  • Exploratory Data Analysis Course

    Thanks for offering these courses free of charge. They are great! But I did want to let you know that there is something wrong with some of the questions. This is the second one that has told me I am incorrect even though I have the same answers as shown.  

    dunne dunne
    Discussions |
    Feb 22, 2021 10:21 AM
    1269 views | 2 replies

  • JMPStart - Custome Window must be in front of Home Window

    I would like my own Window menu to be the front window when JMP is started.I tried to put my menu window script in jmpStart.jsl.  It loads the menu, but when loaded is at the back of the Home Window.  I tried to minimize the home window with a old suggestion of David Burnham. ServerMenu = New Window( "Access to QAQC Add-ins", ......);Main Menu("Minimize All");ServerMenu << On Close(  Main Menu("Re...

    hans_deroos hans_deroos
    Discussions |
    Feb 22, 2021 10:09 AM
    1166 views | 1 replies

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Revolutionizing Spectral Baseline Correction in JMP: Harness the Power of Python Integration

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