remove batch effect
I have a data set coming from two independent experiments. I see for some samples there are batch to batch response (final outcome) variation. Please guide me in- how to mitigate this batch effect in JMP.Thanks
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view all learning resourcesI have a data set coming from two independent experiments. I see for some samples there are batch to batch response (final outcome) variation. Please guide me in- how to mitigate this batch effect in JMP.Thanks
Hello, Please allow me to ask a stupid question.I just realized that prediction profiler Y-axis values do not match with the actual data.I ran factorial analysis with actual data and had prediction profilers.When I compared actual data with the prediction values, the values are different.For example, I have actual data 5% for 100 g of A, 50 g of B, and 100 ug of C condition. However, on the predic...
Hi there, I'm new to the community and I'm still quite a beginner at JMP. I have the following problem: I did a full factorial 3 ^ 3 plan. The results I got are not linear but increase exponentially. When evaluating the "ordinary least squares" I only get a linear model. Is there a way to do a regression with a higher degree polynomial? If so, how could I do that? Thanks in advance.
How do I calculate leverage values in JMP? Is there a way to get a column of the data?
I have a data set coming from two independent experiments. I see for some samples there are batch to batch response (final outcome) variation. Please guide me in- how to mitigate this batch effect in JMP.Thanks
Hi there, I'm new to the community and I'm still quite a beginner at JMP. I have the following problem: I did a full factorial 3 ^ 3 plan. The results I got are not linear but increase exponentially. When evaluating the "ordinary least squares" I only get a linear model. Is there a way to do a regression with a higher degree polynomial? If so, how could I do that? Thanks in advance.
How do I calculate leverage values in JMP? Is there a way to get a column of the data?
Hello everyone, I am making a script which exports all the tables and graphs in a pdf file.However, I would like to insert page breaks, and can't find the way to do it. Is there someone who can help me with this? I would also like to add:- the raw data table in my pdf file- and some sentences below a graph for example.Is it possible to make these two things? Thanks a lot for your reply,Sebastien
I have looked in the scripting help section and all over this community and haven't found a solution for my problem so hopefully someone can help. I have a graph containing two trend lines and a bar graph and want to label the values of each point but when I set the labels both values show up on each trend line and I can't figure out how to separate the labels. I tried stacking the labelled column...
Hi,
I understand that the contouring is done based on triangulation to data points, but is there a method for expanding them further to fit a custom SHP file I've imported into JMP? I've already set the alpha and the lowest value so the contour should cover the, 'most', area. Any other methods? Thanks!
I am fitting a model of a continuous response against 7 fixed effects. When running the Standard Least Squares; my residuals plots/assumptions checks don't look too bad but the Durbin Watson test is suggesting an AR(1) structure in the residuals. This is expected for this particular analysis and is consistent with other data sets looking at the same response/factors. The Time Series platform also ...
Hi,I want to export the prediction formula generated by Functional Data Explorer either to Excel or Python (via Formula Depot), but there is a problem because the formula contains P Spline Coef() interpolation, which I think is not available in Excel or in Python libraries. Do you have any suggestions how to solve this?Best regards
Hello,I need to change the locations of the separators line in the graph.In the attached image, I need the separators lined on the upper row (labeled ISI).I have tried to find how to do that without success.Thanks
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