circos plot
Does anyone know how to make a circos plot for synteny analysis using JMP Genomics?
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view all learning resourcesDoes anyone know how to make a circos plot for synteny analysis using JMP Genomics?
I am analyzing a set of data about graph performance. I am comparing surface graphs with non surface graphs. In this analysis I have two tasks, A and B. I'm measuring the absloute difference (=participant's answer-correct answer). ABSDifference is ranging from 0 to 100. Its distribution is like a half normal distribution. To analyze this dataset, I used Fit Model, ABS differnce as Y by Graph and ...
Hi I know you can join tables with JMP. How would I do a join between. In SQL server its something like SELECT * FROM [L].[dbo].[P] P
INNER JOIN [L].[dbo].[FPD] FPD ON
P.[Join Date] BETWEEN FPD.[BeginDate] and FPD.[EndDate] The script builder gives me code like the below with what EQ probably stands for equals. THe between part I added and am trying to figure out the correct way if possible to do i...
Hello Everyone, I have two separate data files (one for eye movements and one for performance on a task). I want to combine these two data files into one file so that I can analyze them with one another, but am running into troubles on how to get started. The two data files have nothing but the participant file name in common and have varying amounts of responses per participants (ie. The eye mo...
Hi, I have a large data set with a common time axis. I want to add a column with events that occurred, to display these events as a vertical reference line (on the X-axis). How can I do this? If I now make one graph, I need to manually copy all X-axis reference lines to another graph, I want an automated option to do this.The events will add extra information regarding the trends observed and will...
I am analyzing a set of data about graph performance. I am comparing surface graphs with non surface graphs. In this analysis I have two tasks, A and B. I'm measuring the absloute difference (=participant's answer-correct answer). ABSDifference is ranging from 0 to 100. Its distribution is like a half normal distribution. To analyze this dataset, I used Fit Model, ABS differnce as Y by Graph and ...
Hello Everyone, I have two separate data files (one for eye movements and one for performance on a task). I want to combine these two data files into one file so that I can analyze them with one another, but am running into troubles on how to get started. The two data files have nothing but the participant file name in common and have varying amounts of responses per participants (ie. The eye mo...
Hi, I have a large data set with a common time axis. I want to add a column with events that occurred, to display these events as a vertical reference line (on the X-axis). How can I do this? If I now make one graph, I need to manually copy all X-axis reference lines to another graph, I want an automated option to do this.The events will add extra information regarding the trends observed and will...
Is there an add-in that can export tabulate to excel?I only found add-in that can export data table to excel. Thanks in advance!
JMP 14 and JMP Pro 14 have received enhancements and fixes in this first maintenance release, JMP 14.1. Please go to jmp.com/update today to update your software—at no charge. You can keep your software updated by setting the preferences to check for updates automatically. In JMP, go to File>Preferences>JMP Updates, and then select the “Check for Updates” box.
I am trying to show line of fit in graph builder for several sets of data. The data table have many columns, I want to show the column(i) vs column(1).Every column can be grouped by A1 & a, also can be grouped by B1 & b, but except column(1). The follow is the chart about column(2) vs column(1): I use the follow script to change the type of lines:Dispatch(
{},
"400",
ScaleBox,
{Legend Model(
8,...
Hello!
How do I get the mean separation letter in for each level of a factor when interaction is significant? For example, if I have A*B interaction and I want to get the mean separation of B at each level of A, how do I get the LSD letters in JMP? I can do test slices and that will use the DF of the full analysis, but this does not shows which mean of B differs. If I do multiple comparison: How ca...
Hi all,I need to perform the ANCOVA for a repeated-measures design. I tried to adapt the Julian's ANCOVA procedure showed on the https://www.youtube.com/watch?v=mApbp1RDy-U to my study case (repeated-measures design). Initially, I did the following actions: 1. In the Fit Y by X dialogue: I selected VAR_Y as "Y, Response" and VAR_X as "X, Factor";2. For "Group by" I selected the variable Timepoint;...
Hello Everyone, My question pertains to understanding what the terminology in JMP's prewhiten platform means.Also, understanding how that helps me determine an appropriate Transfer Function that I can use to test whether x causes y. JMP's prewhiten output shows three different ACF's labeled "Prewhiten Corr", "Noise AutoCorr", & "Noise Partial AutoCorr".
What is the Prewhiten Corr, Noise AutoCorr, &...
Hi all--having an issue. I am using Fit Y by X to fit 5,000 separate regressions. I hold control, select red drop-down arrow, and Fit->Flexible, Fit->Spline and select, say, 0.1. This fits a spline to all 5,000 graphs with lambda of 0.1. I have 28 X values in each of 5,000 graphs, and I understand there are 4 different spline coefficients (A, B, C, D). I understand if I just had 1 regression...
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