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ayman
Level II

How to create isopleths of dissolved oxygen for lake?

I am trying to create an isopleth of dissolve oxygen for a lake as shown below using JMP. The data I have includes month, depth, and dissolved oxygen. 

 

 

.Isopleths-of-dissolved-oxygen-for-lake-Rabindra-Sarobar-during-the-simulation-period_W640.jpg  

3 ACCEPTED SOLUTIONS

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gzmorgan0
Super User

Re: How to create isopleths of dissolved oxygen for lake?

In JMP there are two methods that might work, depending upon your table setup. Likely a contour is what you want

 

Below is a picture, from JMP sample data Little Pond. Its x axis is spatial distance not time. You will have to customize the color scheme.  A script to create the picture follows.

 

You can produce a contour with Main Menu Graphs > Contour Plot or Graph Builder. Contour plot has more customization.

 

From Contour choose Days and Depth for X and Dissolved Oxygen for Y Ask to fill areas.  You can choose your levels for the Z variable (Dissolved Oxygen).

 

image.png

Names Default To Here( 1 );
dt = Open( "$SAMPLE_DATA/Little Pond.jmp" );

obj = dt << Contour Plot(
	X( :X, :Y ),
	Y( :Z ),
	Show Data Points( 0 ),
	Fill Areas( 1 ),
	Label Contours( 1 ),
	Transform( "None" ),
	Specify Contours( Min( -4 ), Max( 8 ), N( 7 ) ),
	SendToReport(
		Dispatch( {}, "Contour Plot Graph", FrameBox, {Frame Size( 594, 326 )} )
	)
);

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ayman
Level II

Re: How to create isopleths of dissolved oxygen for lake?

Thanks! 

How can I make the line smoother?

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XanGregg
Staff

Re: How to create isopleths of dissolved oxygen for lake?

For smoothing, the most general option is to create a smoothed version of your data in a new column with a regular modeling platform or the Guassian Process platform. And then graph that data.

 

In JMP 14, there is a smoothness slider in Graph Builder's contour element which will dynamically apply a kernel density smoother. However, it doesn't have the line labeling options of the Contour Plot platform.

contoursmoother.gif

 

 

 

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6 REPLIES 6
Highlighted
gzmorgan0
Super User

Re: How to create isopleths of dissolved oxygen for lake?

In JMP there are two methods that might work, depending upon your table setup. Likely a contour is what you want

 

Below is a picture, from JMP sample data Little Pond. Its x axis is spatial distance not time. You will have to customize the color scheme.  A script to create the picture follows.

 

You can produce a contour with Main Menu Graphs > Contour Plot or Graph Builder. Contour plot has more customization.

 

From Contour choose Days and Depth for X and Dissolved Oxygen for Y Ask to fill areas.  You can choose your levels for the Z variable (Dissolved Oxygen).

 

image.png

Names Default To Here( 1 );
dt = Open( "$SAMPLE_DATA/Little Pond.jmp" );

obj = dt << Contour Plot(
	X( :X, :Y ),
	Y( :Z ),
	Show Data Points( 0 ),
	Fill Areas( 1 ),
	Label Contours( 1 ),
	Transform( "None" ),
	Specify Contours( Min( -4 ), Max( 8 ), N( 7 ) ),
	SendToReport(
		Dispatch( {}, "Contour Plot Graph", FrameBox, {Frame Size( 594, 326 )} )
	)
);

View solution in original post

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ayman
Level II

Re: How to create isopleths of dissolved oxygen for lake?

It is working! thank you so much.

Highlighted
gzmorgan0
Super User

Re: How to create isopleths of dissolved oxygen for lake?

Oh, one item that is on a wish list that I hope JMP tackles in the next version is to separate the outline of shapes and the fill.

 

Since I liked your plot with the contour lines visible and a different color than the fill, I decided to see what it would take to get the outlines.  It's not too bad. Here is the picture.  The script is attached; it was tested in JMP12, 13, and 14. 

image.png

Highlighted
ayman
Level II

Re: How to create isopleths of dissolved oxygen for lake?

Thanks! 

How can I make the line smoother?

View solution in original post

Highlighted
XanGregg
Staff

Re: How to create isopleths of dissolved oxygen for lake?

For smoothing, the most general option is to create a smoothed version of your data in a new column with a regular modeling platform or the Guassian Process platform. And then graph that data.

 

In JMP 14, there is a smoothness slider in Graph Builder's contour element which will dynamically apply a kernel density smoother. However, it doesn't have the line labeling options of the Contour Plot platform.

contoursmoother.gif

 

 

 

View solution in original post

Highlighted
ayman
Level II

Re: How to create isopleths of dissolved oxygen for lake?

Thanks!

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