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Manny_B
Manny_B
Level I

Dataset normalization in jmp 17

Sep 6, 2023 04:20 PM (350 views)

Can anyone please help me figure out how to access the various dataset normalization tools in JMP 17?  I couldn't find any detailed explanation in the ebook  "Genomic Analysis with JMP Pro". JMP Genomics had all the various normalization tools for both array and RNAseq datasets. Thank you.

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1 REPLY 1
Chris_Kirchberg
Staff Chris_Kirchberg
Staff

Re: Dataset normalization in jmp 17

Created: Sep 11, 2023 12:53 PM  |  Last Modified: Sep 11, 2023 12:56 PM (311 views)  |  Posted in reply to message from Manny_B 09-06-2023

Hi @Manny_B ,

The Normalization methods that were in JMP Genomics were not ported over to JMP Pro 17.  Some of the normalization methods (log2) can be performed by selecting all columns and then using a right-click and choose new column formula. Please put a request on the Wish List to bring back the methods you use so Product Management can review it.

Sorry, I could not be more help.  I currently use tools outside of JMP Pro 17 to normalize the data and then bring it in to analyze.

Best Regards,

Chris Kirchberg, M.S.2
Data Scientist, Life Sciences - Global Technical Enablement
JMP Statistical Discovery, LLC. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: chris.kirchberg@jmp.com
www.jmp.com
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