Plotting Correlations using tall vs wide datasets

[#1]

I have duplicate measurements that I'd like to plot against each other to check for outliers. My problem is that I have two instances of the same data. So I've labeled one set A & the other B for given metric. In JMP, I can't seem to plot A vs B because they're in the same column. Do I have to label each metric with an A or B to plot them against each other? 
 As an example I attached a simplified dataset. I'd like to make a correlation plot between Set A vs B using a correlation of coverage between the the two. 
 Thanks so much! 

[#2 · Accepted solution]

Split the data table 

     Tables=>Split

Split on Set

Split Columns on Reads and Coverage

Grouping on ID

Then you can easily correlate on the 2 columns created for reads and coverage

Look at Response Screening to get your correlations in a data table format

     Analyze=>Screening=>Response Screening