Are you using v14? Because that will make a few things easier.
To start with, just use File open, and the import wizard to open your excel table.
-JMP writes a Source script in the table.
Then use Control Chart builder to make your graphs, and save the script to the data table.
-JMP writes the cotrol chart script.
While you're there set the control limits as you like, and then Save Limits to a Table.
-Check the scripting guide, it has a scripting for loading spec limits.
At the most basic level all you'll have to to is "glue" these pieces together.
dt=open();
obj=dt<<control chart builder();
obj<< get limits (limit table name):
then for fun, it might be nice to throw in the process screening tool get your alerts.
JMP Systems Engineer, Health and Life Sciences (Pharma)