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• JMP Genomics - ANOVA vs deseq2

  Hello there. I am new to both JMP Genomics and RNA-Seq data analysis. It appears that JMP Genomics 10 implements ANOVA as a means to determine differential gene expression data. However, that vast majority of RNA-Seq gene expression studies use deseq2 or similar R packages. Has anyone done a comparison (or know of a published report) comparing the two methods? What are the pros and cons? Follow up...

  LouisAltamura

  Discussions |

  Feb 11, 2021 8:48 AM

  1886 views | 1 replies

• Filtered Spec limit in a control chart for several features

  Hello,
  I hope you can help me. I'm still very new to JSL. I have the following problem:
  I have a table like this:
  Feature     data            USL
  A           number1       Spec A
  A           number2      Spec A
  A           number3       Spec A
  B          number4       Spec B
  B          number5       Spec B
  B          number6       Spec BThe feature should be selected with the data filter. Then the data sho...

  Rumo

  Discussions |

  Feb 11, 2021 5:47 AM

  1975 views | 4 replies

• How to auto-run attached scripts on a table pulled from database

  Following code will attach all jsl scripts in c:\work directory to the table dt.  Do you know any function/command which can also make it auto-run on the table? dt = Current Data Table(); dir = "C:\work"; fileNames = Files In Directory( dir ); if (dir!="", For( iFile = 1, iFile <= N Items( fileNames ), iFile++, filename = fileNames[iFile]; show(filename); If( Ends With( filename, ".j...

  Dib-Dey

  Discussions |

  Feb 10, 2021 5:33 PM

  1158 views | 1 replies

• How to use a list to select rows with an specific value

  Hi I am trying to use a list of Names that populate a column to select the matching rows of another column (in another Table) in order to subset the table and generate several different subsets.Getting the Names/Values from the first column is no problem but I cannot find the correct syntax for the loop.dt4 = Current Data Table(); uniqueVals = {"2021_file1_T1", "2021_file1_T2"}; tableList= {}; F...

  ALopez

  Discussions |

  Feb 10, 2021 2:48 PM

  2304 views | 2 replies

• How to limit number of legend items?

  I have a plot that is overlayed by hundreds of catergorical values. When user works with it, it only makes sense to compare 2, 3, maximum 5 categories, and user id doing that through data filter.But nothing prevents user from selecting all 150+ categories. In this case they all get displayed in legend, totally breaking windows. Since you wouldn't be able to see anything on the plot in this case an...

  miguello

  Discussions |

  Feb 10, 2021 1:09 PM

  1309 views | 1 replies