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aadecarlojr
aadecarlojr
Level III

third party reference lookup

Jul 31, 2025 01:51 PM (663 views)

I have a genomic locus column and an alleles column for SNP but is there the capability to have JMP use an online SNP reference database to automatically determine the rs number associated with the locus and allelic variation?

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Accepted Solutions
Chris_Kirchberg
Staff Chris_Kirchberg
Staff
Solution

Re: third party reference lookup

Jul 31, 2025 01:58 PM (659 views)  |  Posted in reply to message from aadecarlojr 07-31-2025

Hi @aadecarlojr, 

Unfortunately there is not an automatic lookup function within JMP. You could connect to a database and import an appropriate file and join it into your main table. A custom scripted solution is the only way to make the process more "automatic".

Best,

Chris Kirchberg, M.S.2
Data Scientist, Life Sciences - Global Technical Enablement
JMP Statistical Discovery, LLC. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: chris.kirchberg@jmp.com
www.jmp.com

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1 REPLY 1
Chris_Kirchberg
Staff Chris_Kirchberg
Staff
Solution

Re: third party reference lookup

Jul 31, 2025 01:58 PM (660 views)  |  Posted in reply to message from aadecarlojr 07-31-2025

Hi @aadecarlojr, 

Unfortunately there is not an automatic lookup function within JMP. You could connect to a database and import an appropriate file and join it into your main table. A custom scripted solution is the only way to make the process more "automatic".

Best,

Chris Kirchberg, M.S.2
Data Scientist, Life Sciences - Global Technical Enablement
JMP Statistical Discovery, LLC. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: chris.kirchberg@jmp.com
www.jmp.com

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