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table of fold change P value and FDR for comparison of groups


Community Member


Sep 5, 2018

I have datasets with many response variables (~15K) and many samples (~7K).  I have clustered the samples based on prior knowledge into 10 clusters, and need to define the variables that are characteristic for each.  I want to generate a table/matrix that lists all the variables vs the clusters,  with the fold change (ratio) in mean response values (each cluster vs all other samples together) with P values (either corrected or not) and FDR if possible. 


Hoping there is a simple way to generate this.   ANOVA or negative binomial options would be helpful.