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genecb

Community Member

Joined:

Sep 5, 2018

table of fold change P value and FDR for comparison of groups

I have datasets with many response variables (~15K) and many samples (~7K).  I have clustered the samples based on prior knowledge into 10 clusters, and need to define the variables that are characteristic for each.  I want to generate a table/matrix that lists all the variables vs the clusters,  with the fold change (ratio) in mean response values (each cluster vs all other samples together) with P values (either corrected or not) and FDR if possible. 

 

Hoping there is a simple way to generate this.   ANOVA or negative binomial options would be helpful.

 

 

1 REPLY
KarenC

Super User

Joined:

Feb 10, 2013

Re: table of fold change P value and FDR for comparison of groups

I would suggest you look at the screening tools: Analyze > Screening > Response Screening.  I often use the response screening platform for what I think you are trying to do.  The documentaiton is at:

 

https://www.jmp.com/support/help/14/response-screening.shtml