Try the Materials Informatics Toolkit, which is designed to easily handle SMILES data. This and other helpful add-ins are available in the JMP® Marketplace
Survival Analysis when "time to event" is category/interval
Mar 12, 2024 06:03 PM(1900 views)
Hi there
Does JMP have a module/script to run a Survival analysis when we group the event times into intervals (as en example, time to event split into a category, 0 - 5 days, 6 -10 days, 11-15 days etc...).
Based on the limited description you provided, it is difficult to answer that question, but you intervals are in Y, not X, so segmenting the model does not seem reasonable to me.
I have as time to event variable (continuous variable which is observed each day) and a censor variable pre-defined. Curious to know if i categories the time to event variable how does oen fit a COX PH?
Yes, JMP does offer capabilities for conducting Survival analysis, including scenarios where event times are grouped into intervals. You can achieve this using the "Interval Censoring" option in the Fit Life by X platform. This allows you to specify intervals for the event times and perform Survival analysis accordingly. Thanks for sharing https://community.jmp.com/t5/Discussions/Survival-Analysis-when-quot-time-to-event-quot-is-category/...view
Given that I’m interested in estimating a hazard rate per time ‘interval ‘is this possible?
So assume I have pre-specified time to event intervals, as an example 0 to 5 days, for instance and also have a continuous time to event variable - my main interest is estimating a hazard ratio for the interval (0 to 5 days) for instance.
'
var data = div.getElementsByClassName("video-js");
var script = document.createElement('script');
script.src = "https://players.brightcove.net/" + data_account + "/" + data_palyer + "_default/index.min.js";
for(var i=0;i< data.length;i++){
videodata.push(data[i]);
}
}
}
for(var i=0;i< videodata.length;i++){
document.getElementsByClassName('lia-vid-container')[i].innerHTML = videodata[i].outerHTML;
document.body.appendChild(script);
}
}
catch(e){
}
/* Re compile html */
$compile(rootElement.querySelectorAll('div.lia-message-body-content')[0])($scope);
}
if (code_l.toLowerCase() != newBody.getAttribute("slang").toLowerCase()) {
/* Adding Translation flag */
var tr_obj = $filter('filter')($scope.sourceLangList, function (obj_l) {
return obj_l.code.toLowerCase() === newBody.getAttribute("slang").toLowerCase()
});
if (tr_obj.length > 0) {
tr_text = "This post originally written in lilicon-trans-text has been computer translated for you. When you reply, it will also be translated back to lilicon-trans-text.".replace(/lilicon-trans-text/g, tr_obj[0].title);
try {
if ($scope.wootMessages[$rootScope.profLang] != undefined) {
tr_text = $scope.wootMessages[$rootScope.profLang].replace(/lilicon-trans-text/g, tr_obj[0].title);
}
} catch (e) {
}
} else {
//tr_text = "This message was translated for your convenience!";
tr_text = "This message was translated for your convenience!";
}
try {
if (!document.getElementById("tr-msz-" + value)) {
var tr_para = document.createElement("P");
tr_para.setAttribute("id", "tr-msz-" + value);
tr_para.setAttribute("class", "tr-msz");
tr_para.style.textAlign = 'justify';
var tr_fTag = document.createElement("IMG");
tr_fTag.setAttribute("class", "tFlag");
tr_fTag.setAttribute("src", "/html/assets/lingoTrFlag.PNG");
tr_fTag.style.marginRight = "5px";
tr_fTag.style.height = "14px";
tr_para.appendChild(tr_fTag);
var tr_textNode = document.createTextNode(tr_text);
tr_para.appendChild(tr_textNode);
/* Woot message only for multi source */
if(rootElement.querySelector(".lia-quilt-forum-message")){
rootElement.querySelector(".lia-quilt-forum-message").appendChild(tr_para);
} else if(rootElement.querySelector(".lia-message-view-blog-topic-message")) {
rootElement.querySelector(".lia-message-view-blog-topic-message").appendChild(tr_para);
} else if(rootElement.querySelector(".lia-quilt-blog-reply-message")){
rootElement.querySelector(".lia-quilt-blog-reply-message").appendChild(tr_para);
} else if(rootElement.querySelector(".lia-quilt-tkb-message")){
rootElement.querySelector(".lia-quilt-tkb-message").appendChild(tr_para);
} else if(rootElement.querySelector(".lia-quilt-tkb-reply-message")){
rootElement.querySelector(".lia-quilt-tkb-reply-message").insertBefore(tr_para,rootElement.querySelector(".lia-quilt-row.lia-quilt-row-footer"));
} else if(rootElement.querySelector(".lia-quilt-idea-message")){
rootElement.querySelector(".lia-quilt-idea-message").appendChild(tr_para);
}else if(rootElement.querySelector(".lia-quilt-column-alley-left")){
rootElement.querySelector(".lia-quilt-column-alley-left").appendChild(tr_para);
}
else {
if (rootElement.querySelectorAll('div.lia-quilt-row-footer').length > 0) {
rootElement.querySelectorAll('div.lia-quilt-row-footer')[0].appendChild(tr_para);
} else {
rootElement.querySelectorAll('div.lia-quilt-column-message-footer')[0].appendChild(tr_para);
}
}
}
} catch (e) {
}
}
} else {
/* Do not display button for same language */
// syncList.remove(value);
var index = $scope.syncList.indexOf(value);
if (index > -1) {
$scope.syncList.splice(index, 1);
}
}
}
}
}
}
angular.forEach(mszList_l, function (value) {
if (document.querySelectorAll('div.lia-js-data-messageUid-' + value).length > 0) {
var rootElements = document.querySelectorAll('div.lia-js-data-messageUid-' + value);
}else if(document.querySelectorAll('.lia-occasion-message-view .lia-component-occasion-message-view').length >0){
var rootElements = document.querySelectorAll('.lia-occasion-message-view .lia-component-occasion-message-view')[0].querySelectorAll('.lia-occasion-description')[0];
}else {
var rootElements = document.querySelectorAll('div.message-uid-' + value);
}
angular.forEach(rootElements, function (rootElement) {
if (value == '733575' && "ForumTopicPage" == "TkbArticlePage") {
rootElement = document.querySelector('.lia-thread-topic');
}
/* V1.1 Remove from UI */
if (document.getElementById("tr-msz-" + value)) {
document.getElementById("tr-msz-" + value).remove();
}
if (document.getElementById("tr-sync-" + value)) {
document.getElementById("tr-sync-" + value).remove();
}
/* XPath expression for subject and Body */
var lingoRBExp = "//lingo-body[@id = " + "'lingo-body-" + value + "'" + "]";
lingoRSExp = "//lingo-sub[@id = " + "'lingo-sub-" + value + "'" + "]";
/* Get translated subject of the message */
lingoRSXML = doc.evaluate(lingoRSExp, doc, null, XPathResult.UNORDERED_NODE_SNAPSHOT_TYPE, null);
for (var i = 0; i < lingoRSXML.snapshotLength; i++) {
/* Replace Reply/Comment subject with transalted subject */
var newSub = lingoRSXML.snapshotItem(i);
/*** START : extracting subject from source if selected language and source language is same **/
var sub_L = "";
if (newSub.getAttribute("slang").toLowerCase() == code_l.toLowerCase()) {
if (value == '733575') {
sub_L = decodeURIComponent($scope.sourceContent[value].subject);
}
else{
sub_L = decodeURIComponent($scope.sourceContent[value].subject);
}
} else {
sub_L = newSub.innerHTML;
}
/*** End : extracting subject from source if selected language and source language is same **/
/* This code is placed to remove the extra meta tag adding in the UI*/
try{
sub_L = sub_L.replace('<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />','');
}
catch(e){
}
// if($scope.viewTrContentOnly || (newSub.getAttribute("slang").toLowerCase() != code_l.toLowerCase())) {
if ($scope.viewTrContentOnly) {
if ("ForumTopicPage" == "IdeaPage") {
if (value == '733575') {
if( (sub_L != "") && (sub_L != undefined) && (sub_L != "undefined") ){
document.querySelector('.MessageSubject .lia-message-subject').innerHTML = sub_L;
}
}
}
if ("ForumTopicPage" == "TkbArticlePage") {
if (value == '733575') {
if( (sub_L != "") && (sub_L != undefined) && (sub_L != "undefined") ){
var subTkbElement = document.querySelector('.lia-thread-subject');
if(subTkbElement){
document.querySelector('.lia-thread-subject').innerHTML = sub_L;
}
}
}
}
else if ("ForumTopicPage" == "BlogArticlePage") {
if (value == '733575') {
try {
if((sub_L != "") && (sub_L!= undefined) && (sub_L != "undefined")){
var subElement = rootElement.querySelector('.lia-blog-article-page-article-subject');
if(subElement) {
subElement.innerText = sub_L;
}
}
} catch (e) {
}
/* var subElement = rootElement.querySelectorAll('.lia-blog-article-page-article-subject');
for (var subI = 0; subI < subElement.length; subI++) {
if((sub_L != "") && (sub_L!= undefined) && (sub_L != "undefined")){
subElement[subI].innerHTML = sub_L;
}
} */
}
else {
try {
// rootElement.querySelectorAll('.lia-blog-article-page-article-subject').innerHTML= sub_L;
/** var subElement = rootElement.querySelectorAll('.lia-blog-article-page-article-subject');
for (var j = 0; j < subElement.length; j++) {
if( (sub_L != "") && (sub_L != undefined) && (sub_L != "undefined") ){
subElement[j].innerHTML = sub_L;
}
} **/
} catch (e) {
}
}
}
else {
if (value == '733575') {
try{
/* Start: This code is written by iTalent as part of iTrack LILICON - 98 */
if( (sub_L != "") && (sub_L != undefined) && (sub_L != "undefined") ){
if(document.querySelectorAll('.lia-quilt-forum-topic-page').length > 0){
if(rootElement.querySelector('div.lia-message-subject').querySelector('h5')){
rootElement.querySelector('div.lia-message-subject').querySelector('h5').innerText = decodeURIComponent(sub_L);
} else {
rootElement.querySelector('.MessageSubject .lia-message-subject').innerText = sub_L;
}
} else {
rootElement.querySelector('.MessageSubject .lia-message-subject').innerText = sub_L;
}
}
/* End: This code is written by iTalent as part of iTrack LILICON - 98 */
}
catch(e){
console.log("subject not available for second time. error details: " + e);
}
} else {
try {
/* Start: This code is written by iTalent as part of LILICON - 98 reported by Ian */
if ("ForumTopicPage" == "IdeaPage") {
if( (sub_L != "") && (sub_L != undefined) && (sub_L != "undefined") ){
document.querySelector('.lia-js-data-messageUid-'+ value).querySelector('.MessageSubject .lia-message-subject').innerText = sub_L;
}
}
else{
if( (sub_L != "") && (sub_L != undefined) && (sub_L != "undefined") ){
rootElement.querySelector('.MessageSubject .lia-message-subject').innerText = sub_L;
/* End: This code is written as part of LILICON - 98 reported by Ian */
}
}
} catch (e) {
console.log("Reply subject not available. error details: " + e);
}
}
}
// Label translation
var labelEle = document.querySelector("#labelsForMessage");
if (!labelEle) {
labelEle = document.querySelector(".LabelsList");
}
if (labelEle) {
var listContains = labelEle.querySelector('.label');
if (listContains) {
/* Commenting this code as bussiness want to point search with source language label */
// var tagHLink = labelEle.querySelectorAll(".label")[0].querySelector(".label-link").href.split("label-name")[0];
var lingoLabelExp = "//lingo-label/text()";
trLabels = [];
trLabelsHtml = "";
/* Get translated labels of the message */
lingoLXML = doc.evaluate(lingoLabelExp, doc, null, XPathResult.UNORDERED_NODE_SNAPSHOT_TYPE, null);
/* try{
for(var j=0;j,';
}
trLabelsHtml = trLabelsHtml+'