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Sep6
Sep6
Level I

Linkage Map order

May 26, 2021 12:16 PM (1767 views)

How long does it take to run Linkage map order step? This process is running for two days in my case and I even don't have a large data set.

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2 REPLIES 2
Phil_Kay
Staff Phil_Kay
Staff

Re: Linkage Map order

Jun 2, 2021 04:47 AM (1601 views)  |  Posted in reply to message from Sep6 05-26-2021

Hi,

I think that you might need to provide a bit more information to help the JMP Community to help you with this. Can you describe the data that you are looking at. I imagine data size will be important here, for example.

I assume that you are using JMP Genomics. Is that correct?

I am not an expert in JMP Genomics but I am sure that someone in the community can help if you can say a bit more about what you are trying to do.

Regards,

Phil

Chris_Kirchberg
Staff Chris_Kirchberg
Staff

Re: Linkage Map order

Jun 2, 2021 08:51 AM (1586 views)  |  Posted in reply to message from Sep6 05-26-2021

Hi @Sep6 ,

 

How many SNPs/Genotypes by how many samples and how many linkage groups were defined in teh Recombination and Linkage Groups process?

 

You can save the settings used in the Linkage Map Order dialog (see Save button at bottom of dialog) and attach to this post if there is nothing proprietary about the names of the samples and naming of the SNPs/Genotypes. The data will not be transmitted, only how each field was assigned.

 

Thanks,

Chris Kirchberg, M.S.2
Data Scientist, Life Sciences - Global Technical Enablement
JMP Statistical Discovery, LLC. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: [email protected]
www.jmp.com

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