It's possible to do this in Graph Builder, in JMP 10 and JMP 11. What version of JMP are you using?
I created a simple table with an X and Y column, where both were quantitative (=continuous) variables. I was able to click on the boxplot icon to create a boxplot no problem.
Try copying and pasting the following code into a script window, and then hit CTRL-R to run it.
New Table( "Demo Box Plot",
Add Rows( 13 ),
New Script(
"Graph Builder",
Graph Builder(
Show Control Panel( 0 ),
Variables( X( :x ), Y( :Column 2 ) ),
Elements(
Box Plot(
X, Y, Legend( 3 ), Jitter( 1 ),
Outliers( 1 ), Box Style( "Outlier" )
)
)
)
),
New Column( "x", Numeric, Continuous,
Format( "Best", 12 ),
Set Values( [1, 1, 1, 2, 2, 2, 3, 3, 3, 3, 3, 4, 4] )
),
New Column( "Column 2", Numeric,
Continuous, Format( "Best", 12 ),
Set Values( [20.1, 20.3, 18, 15, 17, 34, 65, 45, 34, 54, 34, 12, 24] )
)
);