The Operator variance component is negative and has therefore been set to 0. You can see this via Fit Model.
Fit Model(
Y( :Impact Strength ),
Effects,
Random Effects( :Sample, :Operator, :Sample * :Operator ),
NoBounds( 1 ),
Personality( "Standard Least Squares" ),
Method( "REML" ),
Emphasis( "Minimal Report" ),
Run(
:Impact Strength << {Summary of Fit( 1 ), Analysis of Variance( 0 ), Parameter Estimates( 1 ),
Scaled Estimates( 0 ), Plot Actual by Predicted( 0 ), Plot Regression( 0 ),
Plot Residual by Predicted( 0 ), Plot Studentized Residuals( 0 ), Plot Effect Leverage( 0 ),
Plot Residual by Normal Quantiles( 0 )}
)
);
The reproducibility value given in the EMP Gauge R&R Results report does not include interactions and negative variance components are set to zero.