You said, "Thank you for your jmp file. the number of runs is very small and doesn't cover the design space. i know i can increase it in the user-specified number of runs section, but do you know how can i visualize it ( a cube plot or anything similar) and add points where i want?"
How would you know when it covers the design space? How would you know a good place to observe when you see it?
The optimal design (i.e., best set of conditions to be observed) depends on the model. You say that you expect the response to be non-linear. If that claim is true, I doubt that you are able to identify the best combination of factor levels. (I have the same doubt about everyone, including myself.) For example, take the simple case of a single continuous factor. The non-linearity of the response requires a cubic polynomial model. That model requires four levels of the factor. Most people would spread them evenly across the factor range: -1, -1/3, +1/3, +1. Those levels can be used to fit the cubic polynomial model, but they are not the optimal levels. Exactly where are those optimal levels?
I recommend that you use a method that is built to find the exact optimal levels for a linear model of any order: custom design. In this case, you could entertain higher order polynomial functions as linear models if you believe that the non-linearity is that complex. (Complexity of response dictates the complexity of the model of it.) My point is that you should not pick the points, you should pick the model and let JMP find the points.
If you are wrong, you can always augment the initial design with custom design and continue. Repeat as necessary.
You could also use a Space Filling design as used with computer simulations in the absence of a stochastic component in the response. A good choice for a model is the Gaussian Process interpolator. The response can include random variance, too. GP models can be used to predict the response locally and obtain optimum factor levels. You can start with a modest design and augment the space filling design if you feel that the non-linearity is not fully represented.
I would not use a visualization tool to find the best observation points. I would use a design of experiments tool. I would use a visualization tool to understand the model.