JMP Genomics provides three options for the ANOVA modeling parameter in the RNA-Seq Basic Analysis workflow: Poisson, Generalized Poisson, and Negative Binomial. How does one decide amongst these options? Also, I can never seem to get the Negative Binomal to work. I get the error below on various data sets:
ERROR: NEWRAP Optimization cannot be completed
Oh darn ... I was hoping this was built into JMP Genomics somehow.
Well, that sort of thing would be a good feature request.
Agreed, could you put it on the Wish List here so people can vote on it? Product Management looks at this list as well.
JMP Wish List - JMP User Community