This website uses Cookies. Click Accept to agree to our website's cookie use as described in our Privacy Policy. Click Preferences to customize your cookie settings.
Accept
Reject
Preferences
cancel
Turn on suggestions
Auto-suggest helps you quickly narrow down your search results by suggesting possible matches as you type.
Showing results for 
Show  only  | Search instead for 
Did you mean: 
Have your say in shaping JMP's future by participating in the new JMP Wish List Prioritization Survey
Choose Language Hide Translation Bar
LouisAltamura
LouisAltamura
Level I

Choosing the RNA-Seq modeling parameter

Created: Feb 8, 2022 12:11 PM  |  Last Modified: Jun 8, 2023 08:45 PM (1488 views)

JMP Genomics provides three options for the ANOVA modeling parameter in the RNA-Seq Basic Analysis workflow: Poisson, Generalized Poisson, and Negative Binomial. How does one decide amongst these options? Also, I can never seem to get the Negative Binomal to work. I get the error below on various data sets:

 

ERROR: NEWRAP Optimization cannot be completed

0 Kudos
11 REPLIES 11
LouisAltamura
LouisAltamura
Level I

Re: Choosing the RNA-Seq modeling parameter

Feb 8, 2022 03:43 PM (367 views)  |  Posted in reply to message from Chris_Kirchberg 02-08-2022

Oh darn ... I was hoping this was built into JMP Genomics somehow.

 

Well, that sort of thing would be a good feature request.

0 Kudos
Chris_Kirchberg
Staff Chris_Kirchberg
Staff

Re: Choosing the RNA-Seq modeling parameter

Feb 8, 2022 03:52 PM (312 views)  |  Posted in reply to message from LouisAltamura 02-08-2022

Agreed, could you put it on the Wish List here so people can vote on it? Product Management looks at this list as well.

 

JMP Wish List - JMP User Community

Chris Kirchberg, M.S.2
Data Scientist, Life Sciences - Global Technical Enablement
JMP Statistical Discovery, LLC. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: chris.kirchberg@jmp.com
www.jmp.com
0 Kudos