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Choosing the RNA-Seq modeling parameter

LouisAltamura
Level I

JMP Genomics provides three options for the ANOVA modeling parameter in the RNA-Seq Basic Analysis workflow: Poisson, Generalized Poisson, and Negative Binomial. How does one decide amongst these options? Also, I can never seem to get the Negative Binomal to work. I get the error below on various data sets:

 

ERROR: NEWRAP Optimization cannot be completed

11 REPLIES 11


Re: Choosing the RNA-Seq modeling parameter

Oh darn ... I was hoping this was built into JMP Genomics somehow.

 

Well, that sort of thing would be a good feature request.


Re: Choosing the RNA-Seq modeling parameter

Agreed, could you put it on the Wish List here so people can vote on it? Product Management looks at this list as well.

 

JMP Wish List - JMP User Community

Chris Kirchberg, M.S.2
Data Scientist, Life Sciences - Global Technical Enablement
JMP Statistical Discovery, LLC. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: chris.kirchberg@jmp.com
www.jmp.com