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Choosing the RNA-Seq modeling parameter
JMP Genomics provides three options for the ANOVA modeling parameter in the RNA-Seq Basic Analysis workflow: Poisson, Generalized Poisson, and Negative Binomial. How does one decide amongst these options? Also, I can never seem to get the Negative Binomal to work. I get the error below on various data sets:
ERROR: NEWRAP Optimization cannot be completed
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Re: Choosing the RNA-Seq modeling parameter
Oh darn ... I was hoping this was built into JMP Genomics somehow.
Well, that sort of thing would be a good feature request.
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Re: Choosing the RNA-Seq modeling parameter
Agreed, could you put it on the Wish List here so people can vote on it? Product Management looks at this list as well.
JMP Wish List - JMP User Community
Chris Kirchberg, M.S.2
Data Scientist, Life Sciences - Global Technical Enablement
JMP Statistical Discovery, LLC. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: chris.kirchberg@jmp.com
www.jmp.com
Data Scientist, Life Sciences - Global Technical Enablement
JMP Statistical Discovery, LLC. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: chris.kirchberg@jmp.com
www.jmp.com
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