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JMP Wish List

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Tsne / UMAP

Status: Yes, Stay Tuned! Submitted by on ‎08-18-2020 11:02 AM
5 Comments (5 New)

With omics datasets becoming the norm, JMP needs a straightforward way to visualize high-dimensional data... Tsne and UMAP are becoming the norm for this purpose, PC analysis just won't cut it for publication.

The availability of Tsne and UMAP as native tools in JMP would make a world of difference for those of us who don't want/know how to work with R or Python!!! 

Thank you for your attention

L.

 

5 Comments
mia_stephens
Staff
Staff
‎04-14-2022 04:41 PM
‎04-14-2022 04:41 PM
Status changed to: Yes, Stay Tuned!
 
Audrey_Shull
Staff
Staff
‎04-25-2022 10:39 AM
‎04-25-2022 10:39 AM

Greetings all, a quick note to confirm that Tsne is under active development in JMP 17. JMP 17 will be available in the fall of 2022. 

paulp
Level III
‎01-04-2023 06:22 AM
‎01-04-2023 06:22 AM

Very nice to have TSNE in version 17. UMAP is still a welcome addition if it could also be added to jmp or jmp pro. UMAP runs much faster, results in better defined clusters, and the between-cluster spacing is actually interpretable. TSNE spacing distances are somewhat arbitrary.  UMAP is widely useful, has applications for many areas outside of omics.  Thank you 

Audrey_Shull
Staff
Staff
‎01-04-2023 09:48 AM
‎01-04-2023 09:48 AM

Thanks @paulp for the comment - and JMP Development has heard your wish. UMAP is in development as a Multivariate Embedding method in the next release of JMP. JMP 17.1 will be available in a few months. 

paulp
Level III
‎01-04-2023 11:16 AM
‎01-04-2023 11:16 AM

Thank you