Certain very simplistic things are missing in the JMp platform
(1) JMP cannot do propensity score matching
(2) JMP does not calculate Cramer's V or Cohan's D for effect size calculation
(3) JMP cannot do multiple imputation for categorical variables (only does informative missing option)
(4) JMP does not allow random effects in logistic regression models
I may be mistaken in some of these. But I have asked this question in the discussion forums and as far as I can tell are accurate. Some of these are real bummer's