First, welcome to the community. If you have multiple columns of data, JMP can perform a multivariate analysis. It may not be useful, but it won't fail to "work". The more challenging question is how confident are you the results of this study will be true in the future(assuming this is what you mean by "solid conclusion")? Seldom can this be assessed just statistically (I know some may argue with this). The question is how representative of future conditions are the samples you have in hand? Hopefully your SME's can provide some guidance as to how representative the 3 samples you have are of "all samples". I would be suspicious. How were the 3 samples acquired?
“Unfortunately, future experiments (future trials, tomorrow’s production) will be affected by environmental conditions (temperature, materials, people) different from those that affect this experiment…It is only by knowledge of the subject matter, possibly aided by further experiments to cover a wider range of conditions, that one may decide, with a risk of being wrong, whether the environmental conditions of the future will be near enough the same as those of today to permit use of results in hand.”
Dr. Deming
There are ways to be efficient in your sampling that can help to increase the inference space of the study and thereby increase the likelihood your study will be applicable in the future.
"All models are wrong, some are useful" G.E.P. Box