I do not understand the situation enough to provide specific advice and perhaps my thoughts are not useful.
I do have some questions/comments:
Not sure I understand what the response is? Is it rate of evaporation? Evaporation of what (I assume some kind of liquid)? How is it determined (e.g., delta volume, delta weight...)? Have you studied the measurement process?
"I would like to study an impact of the six factors on evaporation (at the end I would like to have a “rigorous” model with possible interaction effects and power terms):"
Do you want a model for explanation and/or for prediction? (What Pete is asking). The model should be useful and appropriate. Having a complex (rigorous) model does not make it better (I would say the exact opposite is true).
"I already know that the first four have a strong impact on evaporation and would like to know whether the last two (plate load, volume/well) should also be included in the study (model)." How did you study the first 4 factors (e.g., observation, experimentation)?. What levels were plate load and volume at when those 4 were studied? If they were constant, the effects of the 4 factors you studied are contingent on those levels (they are part of the inference space). If they varied, they would contribute to the experimental error. Realize the design space and inference space will impact how useful the experiment will be for prediction.
“Unfortunately, future experiments (future trials, tomorrow’s production) will be affected by environmental conditions (temperature, materials, people) different from those that affect this experiment…It is only by knowledge of the subject matter, possibly aided by further experiments to cover a wider range of conditions, that one may decide, with a risk of being wrong, whether the environmental conditions of the future will be near enough the same as those of today to permit use of results in hand.”
Dr. Deming
Scientifically, it seems likely that higher T (if it is temperature), higher exposure Time, increased shaking speed and no lid would increase evaporation rate. What is the surface area of the material that is evaporating? What are the ambient conditions (e.g., dew point)? How representative is the material that is evaporating during the experiments of future material?
I'm not sure I understand your level setting. Analysis is easier if the levels are balanced and equidistant (e.g., T at 20, 27, 34; ExpTime at 4, 7, 10)
"All models are wrong, some are useful" G.E.P. Box