Solved: Problem extracting eigen value data from PCA report when using 'by'

Sburel · Jun 29, 2021 08:10 PM

Hello,

I running a PCA on a data table independently for several categories (specimen_material_type).

For each category, I want to save the eigenvalues of principal components into an eigenvalue data table labelled 'Eigenvalue for XYZ'.

In the example table, I have 2 categories. I manage to retrieve the first set of values using a For loop but then it crashes for the second category.

Any suggestions to keep the loop going would be greatly appreciated.

Thanks in advance

Sebastien

Here's the script I'm trying to run

names default to here(1);
clear log();

define data table=expr(
	New Table("PCAfull NGS library ID", Add Rows(83), New Column("NGS library ID", Character(5), "Nominal", Set Values({"75522", "75523", "75524", "75525", "75526", "75527", "75528", "75529", "75530", "75531", "75532", "75533", "75534", "75535", "75536", "75537", "75538", "75539", "75540", "75541", "75542", "75543", "75544", "75545", "75546", "75547", "75548", "75549", "75550", "75551", "75552", "75553", "75554", "75555", "75556", "75557", "75558", "75559", "75560", "75561", "75562", "75563", "75564", "75565", "76960", "76961", "76962", "76963", "76964", "76966", "76967", "76968", "76970", "76971", "76973", "76974", "76975", "76976", "76978", "76979", "76980", "76981", "76982", "76983", "76984", "76985", "76986", "76987", "76988", "76989", "76990", "76991", "76992", "76993", "76994", "76995", "76996", "76998", "76999", "77000", "77001", "77002", "77003"})), New Column("specimen_material_type", Character, "Nominal", Set Values({"not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "not eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye", "eye"})), New Column("A", Numeric, "Continuous", Format("Best", 10), Set Property("Notes", "added 0.1 to avoid log2 of 0"), Set Property("Axis", {Add Ref Line({-0.58, 0.58}, "Solid", "Medium Light Gray", "", 1, 0.25), Add Ref Line(-0.58, "Dotted", "Light Blue", "(-1.5 fold)", 1), Add Ref Line(0.58, "Dotted", "Light Blue", "(+1.5 fold)", 1)}), Set Property("Color Gradient", {"Blue to Gray to Red", Range({-10, 10, 0})}), Set Values([2.81523292027604, -1, 4.02478319241904, -1, -1, 4.2815929302584, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 2.53194594573136, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 4.08894841905084
	, -1, -1, -1, -1, -1, -1, -1, 2.3126602484075, -1, -1, -1, -1, 3.09560226904009, 1.43786024971756, -1, -1, -1, -1, -1, 1.05304952521298, -1, -1, -1, -1, 1.003842679008, -1, -1, -1, -1, 1.95818375033999
	, -1, -1, -1, -1, 1.62415360527231, 1.05658148223493, 0.692643724473693, -1, 2.86745617620997, -1, -1, -1, 0.656877178052666, -1, -1, -1, -1, -1, -1])), New Column("A2m", Numeric, "Continuous", Format("Best", 10), Set Property("Notes", "added 0.1 to avoid log2 of 0"), Set Property("Axis", {Add Ref Line({-0.58, 0.58}, "Solid", "Medium Light Gray", "", 1, 0.25), Add Ref Line(-0.58, "Dotted", "Light Blue", "(-1.5 fold)", 1), Add Ref Line(0.58, "Dotted", "Light Blue", "(+1.5 fold)", 1)}), Set Property("Color Gradient", {"Blue to Gray to Red", Range({-10, 10, 0})}), Set Values([1.60451338039627, 1.7379934887408, 0.0949197636764503, -2.26893148160169, 1.2199823602359, 0.458316522555575, 0.617560407004941, 1.7108769603372, 0.454215559055898, 0.0147856422376059, 1.15700394899866
	, 0.279743989721128, 1.35568218961989, 0.40897732862397, -2.02554849205654, 0.0626028063787076, 0.032908895992389, 0.47614932094771, -1.20603986236648, 2.35032677037154, 2.49935991525021, 1.25819216652684
	, -0.835378672699606, -0.672402130524789, 0.743583435555904, 0.876602029715063, 4.51735686417174, -0.567303962335732, 2.42061275046452, 1.17444161963283, 1.50738267258403, 2.78243291570032, 1.01145663002848
	, -1.70623882010435, 0.370009375727261, 1.37841631207877, -0.0134933653383186, 1.62385927984512, 1.88393225412704, -0.979394138326553, -0.103610377459425, -0.345939437516782, 1.06267457946493, 1.86623270947081
	, 1.78960085972607, -0.495155988494079, 0.0745873543714788, 0.430158039913087, 0.539410767349254, -0.973206444265609, -1.07967825558086, -0.297846735818846, 0.760328152917581, 1.71484613865236, -0.334160806593491
	, -2.09591658220969, -0.315725057874633, 1.50737970639471, 1.39501707648347, -0.154497042356808, -2.81779520222204, -0.667291774652886, 0.19750554193735, -1.11220589050919, 0.255260658034548, 2.61959680473956
	, -0.684104987689079, 0.00057926987013414, -0.031045353785337, -0.105164619549189, -0.809486125370554, -1.14618728027108, 0.356029277801129, -0.448745730819161, -0.26531862727983, 1.72349091457392, -0.739389904259247
	, 2.44700954268139, 1.44125544875698, -0.329260023996972, -0.975343013225854, 0.337139725887604, 0.21206920364088])), New Column("A2ml1", Numeric, "Continuous", Format("Best", 10), Set Property("Notes", "added 0.1 to avoid log2 of 0"), Set Property("Axis", {Add Ref Line({-0.58, 0.58}, "Solid", "Medium Light Gray", "", 1, 0.25), Add Ref Line(-0.58, "Dotted", "Light Blue", "(-1.5 fold)", 1), Add Ref Line(0.58, "Dotted", "Light Blue", "(+1.5 fold)", 1)}), Set Property("Color Gradient", {"Blue to Gray to Red", Range({-10, 10, 0})}), Set Values([-0.267978719985849, -0.57250805741047, 0.422595786895291, 0.0337302041764496, 0.256583975269946, 0.97204965643375, -1.10964843491292, -0.968739626568384, -0.0924908185609332, 0.987959624014818, 0.0428621603687659
	, -0.34308291104752, 0.223923522254772, 0.16586749861605, 0.727895389908675, 0.769661379859143, -0.747772586004821, -0.214541084912323, -0.645880659190569, -0.719279611493273, 0.588939988868035, 0.418846134760733
	, 0.165742153121929, 0.543662340131567, -1.06489559197305, -0.602369724709973, 1.3354547344466, 0.465222369982708, -0.59518575496857, -0.210300440595899, 1.00913431778553, 0.667772707380214, 0.417090894786379
	, -0.253129982515899, -1.06592765793185, 0.0661279908786629, -0.31386524605738, -0.181897810440236, -1.50004575062989, -1.00857188666128, -0.389849305668704, -0.407090704300613, -0.444327620258024, 0.341457069791423
	, 0.951853625632966, 0.134406855464686, 0.105437337057311, 0.717468775552468, 0.517255526785056, 0.155459648717432, 0.50842269067594, 0.51577812308835, 0.612075578925282, 0.629044377526836, -0.66539904104507
	, -0.1036827279477, -0.0129983670503679, 0.203561465009655, 0.516066074841332, 0.517813183584936, -0.336776870686451, -0.814588241947477, -1.35408905640973, 0.39675706986058, -0.2737185401739, 0.422722614011725
	, 0.0865542503175254, -0.279628756097143, -0.437228887969871, 0.298417028099155, -0.19538137709075, -0.435254561055781, -0.638538725913414, -0.316802040313222, -1.04627667620181, -0.556029080996659, -1.30730843834738
	, 0.609729574045428, 0.416365318833071, -1.04388638396783, -0.913265784961486, -0.290675349503202, -0.0400155946788967])), New Column("A3galt2", Numeric, "Continuous", Format("Best", 10), Set Property("Notes", "added 0.1 to avoid log2 of 0"), Set Property("Axis", {Add Ref Line({-0.58, 0.58}, "Solid", "Medium Light Gray", "", 1, 0.25), Add Ref Line(-0.58, "Dotted", "Light Blue", "(-1.5 fold)", 1), Add Ref Line(0.58, "Dotted", "Light Blue", "(+1.5 fold)", 1)}), Set Property("Color Gradient", {"Blue to Gray to Red", Range({-10, 10, 0})}), Set Values([-1.08509715850208, 0.104736022524232, -0.00862556692992981, -1.31278591792405, -1.63876926962991, -0.743029038725354, -0.187228658512325, -0.513444632685201, 0.406839647795159, -4.90033007877813, -4.90033007877813
	, -4.90033007877813, -1.16546254288738, -4.90033007877813, -4.90033007877813, -0.275450723257436, -4.90033007877813, -4.90033007877813, -0.281520643000253, -4.90033007877813, -4.90033007877813, -4.90033007877813
	, 0.0824731876691679, 0.477725223131015, 0.977337235198232, 0.818027108291735, -0.633775268505485, -0.972298969685575, -1.57432644387473, -0.148682164915817, -4.90033007877813, -4.90033007877813, 0.888711218340541
	, 1.04369012360226, 0.467036902374083, -0.518782842514448, -0.986932806012085, 0.431040677572898, -4.90033007877813, -0.205571090822207, -2.72089525768561, -0.266361713334346, -1.49104756949032, -2.18421116696945
	, -1.66522556544516, -2.00170948702876, 0.418851832415982, 0.363316161698881, 0.063429803528219, -4.29780991059757, -2.34672285291133, -2.51759935044583, 0.634273780941373, -0.532350612793235, -4.29780991059757
	, -0.436658161850398, 0.962745887694349, -2.06214552205818, -0.293008158950686, -0.648614984276923, -4.29780991059757, -0.107018739493328, -0.572781900835527, 0.115943187818302, -0.0803327573500455, -0.740178092801829
	, -1.19956990919536, 0.996698413602645, -0.795676590419268, -2.24122842836264, 0.985824730901028, -0.553942611026116, -1.83004830880123, -0.121849875332677, -0.702004751415262, -0.351511718010065, -0.498723290633013
	, -4.29780991059757, 0.0809430331571471, -4.29780991059757, -2.05694907587967, -4.29780991059757, 0.308156028741795])), New Column("A4galt", Numeric, "Continuous", Format("Best", 10), Set Property("Notes", "added 0.1 to avoid log2 of 0"), Set Property("Axis", {Add Ref Line({-0.58, 0.58}, "Solid", "Medium Light Gray", "", 1, 0.25), Add Ref Line(-0.58, "Dotted", "Light Blue", "(-1.5 fold)", 1), Add Ref Line(0.58, "Dotted", "Light Blue", "(+1.5 fold)", 1)}), Set Property("Color Gradient", {"Blue to Gray to Red", Range({-10, 10, 0})}), Set Values([-0.889665228771552, -3.80390995896744, -3.80390995896744, -0.216365798113365, -1.05398968418564, -3.80390995896744, 1.66369696632116, -0.108734774662702, -0.0106071917501523, 2.16831580128544, -1.8662868899133
	, 1.93009280651242, 0.287540790350048, -0.538592757860935, -3.80390995896744, -3.80390995896744, -0.14278365459503, 1.70063825493234, -3.80390995896744, 1.54043366203514, -0.224494135582669, -3.80390995896744
	, -0.455359035926893, -3.80390995896744, 0.392937775443059, 0.174019861707017, -3.80390995896744, -3.80390995896744, 1.40994889260144, -0.38069624560772, 0.914892212393309, -3.80390995896744, -1.0564970765824
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	, 1.09824086644765, -0.0320702135084519, -0.382069760280038, 0.350628977472457, 0.618420676141251, -0.19159642608436, 0.383893989711438, -2.39830171891859, -0.584632777688297, 1.12118640617489, -0.173841385885346
	, 0.0327246711893619, -1.25421836466334, -4.18043793687061, -1.9395771021527, 1.33451698238299, -0.130112754426275])), New Column("Aa386476", Numeric, "Continuous", Format("Best", 10), Set Property("Notes", "added 0.1 to avoid log2 of 0"), Set Property("Axis", {Add Ref Line({-0.58, 0.58}, "Solid", "Medium Light Gray", "", 1, 0.25), Add Ref Line(-0.58, "Dotted", "Light Blue", "(-1.5 fold)", 1), Add Ref Line(0.58, "Dotted", "Light Blue", "(+1.5 fold)", 1)}), Set Property("Color Gradient", {"Blue to Gray to Red", Range({-10, 10, 0})}), Set Values([-4.50685280135483, -4.50685280135483, -4.50685280135483, 0.987753901634562, -4.50685280135483, -4.50685280135483, -1.4697622476146, -4.50685280135483, 0.0485046626415249, 1.57730455721776, -0.0479483630680235
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	, 1.52654381772209, -0.720973752446256, -3.64719332465353, -3.64719332465353, 1.2984887711908, -0.13893601691152])), New Column("Aa387200", Numeric, "Continuous", Format("Best", 10), Set Property("Notes", "added 0.1 to avoid log2 of 0"), Set Property("Axis", {Add Ref Line({-0.58, 0.58}, "Solid", "Medium Light Gray", "", 1, 0.25), Add Ref Line(-0.58, "Dotted", "Light Blue", "(-1.5 fold)", 1), Add Ref Line(0.58, "Dotted", "Light Blue", "(+1.5 fold)", 1)}), Set Property("Color Gradient", {"Blue to Gray to Red", Range({-10, 10, 0})}), Set Values([3.76305645302726, -1, -1, -1, -1, -1, -1, 3.38688544609292, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, 1.81565944086042, -1, -1, -1
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	, 0.607434981852971, 1.00394433970758, 1.61172699672068, 0.432903416480771, 0.653466636146655, 1.96976990698873]), Eigenvalue([5.28302169296011, 4.17198472651602, 3.78629592090349, 3.29837512258259, 3.08028905302597, 2.85170846102648, 2.41747672482801, 2.40106352548042, 2.06299535997228, 1.99933849490573, 1.87935938017329, 1.75740571031988
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	, 0.602425669234031, 0.535420401888661, 0.46413848957734, 0.4451350037341, 0.394182871520676, 0.347272043377246, 0.322772896746522, 0.260431614913838, 0.236886534142859, 0.202218449633262, 0.18648807161058
	, 0.134186676835814, 0.114462852331721, 0.0981780264469497, 0.0881537758518295, 0.0538252935788348, 0.0470661830413543, 0.0282440076041481]), Eigenvectors(
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	 0.0128545362735286 0.0950878666550859 0.0600773017411655 0.209445942363434 0.138559142869938 0.122469992670977 -0.222619217966286 0.287046395982621 0.0245856389665467 0.0287974652048189 -0.0179618857209099
	 -0.0916524254224162 -0.183242978688241 -0.220871167024541 -0.182268652608747 0.0558234898299495 -0.0135008638158007 -0.227536963205042 -0.14023897280481, 
	-0.0129089719120991 0.0331835356167488 0.297000047078912 -0.15847711678296 0.0834505865877192 -0.016523318081317 0.0857997953904349 -0.262604883021461 -0.0621300217980304 0.145629150097954 0.1549739126469
	 0.044579312928549 -0.112124259924382 0.199195047543175 0.0158156570475619 0.143715717220812 0.0751764294332448 -0.152154455428187 0.166129531412856 -0.0178468147698252 0.199838583335784 0.179257977793507
	 0.116456707021378 0.0562005766540474 -0.0773891654782721 -0.0593272180530805 0.0550927289521425 0.0726939490069011 0.156386743975761 -0.201512854556482 0.0283616723800488 0.227249020812275 0.0621422344070885
	 0.0489122715183448 -0.0692973663160467 -0.10997265338241 0.166878026052662 -0.175825029761063 -0.059867378416754 0.152389430880579 0.12292624461457, 
	0.155079383823097 0.0491449765289549 -0.166008478242786 -0.229063235708068 0.0158848421350488 0.0753429924134546 -0.0487092707004898 0.130735937950481 0.188938763171607 0.253245118894653 -0.20344713839051
	 -0.00832565569134006 0.212398177547842 0.0674737739618694 0.0671519616643941 -0.309630239823027 0.179503361111568 0.159206069705422 -0.261541899189244 -0.257022640427357 0.00184097507923806 -0.223522125727219
	 0.0478562337491742 -0.094007740854305 -0.119220033995302 0.0530604500307403 0.194136366610903 0.161263985676656 0.0624104050006239 -0.0339498843454091 -0.0191044486816317 -0.0152401841150819 -0.0270671811896853
	 0.129941190241422 0.0415328895447712 0.155999283592352 -0.222805776475957 -0.0643245857995819 -0.0456611166198622 0.094199866405624 0.274385974007377, 
	0.146702782964598 0.0221043588526578 0.0248071609503527 -0.00297337250851411 0.180770054483566 -0.117623215653008 -0.233306347176451 0.149207273830544 -0.172306971589381 0.0467708761215375 0.162547586411202
	 -0.0739239162434619 0.196959270259982 -0.0649324920336586 0.0925849565854381 -0.158480960841076 -0.127429620368331 -0.0180144920370198 0.0897403176167999 0.0764202205063776 -0.0996297205465297 0.28717538208009
	 -0.03717264348494 -0.0274698858012529 -0.039555030080241 0.0201217288165571 0.203825574846726 -0.112085944702139 0.207021515205529 0.11265762758125 -0.234782644419331 -0.122647334810151 -0.131248703758107
	 0.129912885098686 0.0686157168249638 0.0168323002210907 -0.0663867707786728 0.0162462530409286 0.0569539354443886 -0.15085503030828 -0.1847247294586, 
	0.0755100231595105 0.255531120938976 -0.0978154040782429 -0.0424786334329562 0.13924136471891 0.0290139373732432 0.151061768592006 -0.188365560472444 -0.319653440787693 0.251219804084322 0.0442837483509243
	 0.167825227634066 -0.122643345210942 0.0145820408445483 0.230583613941892 -0.0545888769181264 0.257729131321175 -0.0135592360801792 -0.0748381710957504 0.152278799873901 0.00539813396508821 -0.139583035361133
	 0.0310129755412842 0.154408789250443 -0.0269450884767465 -0.157432600173275 -0.109160633560728 0.0203821645458104 -0.0493642131349076 0.117156280666519 0.0909483367372967 0.111032459836109 -0.0698347782422781
	 -0.0149319623654068 -0.0644933542867454 0.0674475691991224 0.119394653529772 0.18312642131007 -0.128947681771665 -0.0237599642150612 0.176830976480044, 
	0.209661877249468 0.184964256138864 -0.0368504822037331 0.365101160028196 0.0588446545343416 0.228209512362922 0.090463694725352 0.215413815426452 0.187087140475101 0.145110631625037 -0.265360659929061
	 -0.0882547916446127 -0.0477714293146196 -0.00993647880662029 0.0583429561887966 0.0890447090067616 -0.0368298535867698 0.204086641328637 -0.0979122059922807 -0.000299363904285651 0.0862808636160865 -0.0333910743732885
	 0.0544640237591866 -0.161312450101559 0.186736797092521 -0.00402634165488655 0.151822667599973 -0.108132283063347 0.0526603131663011 0.0352859378692777 0.162702147691832 -0.0844997439439675 0.0957390826031731
	 0.273036156158056 -0.261885676789924 0.0109147874484735 0.0589531074094828 0.150107989517592 0.0806210724797229 0.103605566780611 0.116690540352958])})), New Column("Prin2 By specimen_material_type", Numeric, "Continuous", Format("Best", 12), Set Property("By ID", 363741664), Formula(If(:specimen_material_type == "not eye", [-0.115080221082747 -0.209900225769572 0.0968290351798219 -0.091300586738557 0.0181978957152887 0.159459303654364 -0.0881917041325403 -0.0477372657620772 0.227230024750367 -0.139140653235179 -0.0443383283327189
	 -0.0492743861702296 -0.0420350246490236 0.120087759602982 -0.027344105246931 0.141234980412667 -0.0577195224249864 0.113728440925647 -0.0259010683035995 -0.534405407348148 -0.357065713815592 -0.774334329655162
	 0.455464025564709 -0.0149777659344744 0.0319980671402773 -0.47608658185314 0.262715470232366 -0.167156696192278 0.113552167106919 0.250527898990933 0.00692692898455528 -0.0970215264670978 1.06798743317025
	 0.00139908891424365 -0.114330512415424 0.370108600355094 -0.156615147072368 0.575014132524245 0.127153690727086 0.822728096455019 -0.126011834498153 0.0847696413947763 -0.352024534598753 0.148202504255094
	 0.0362636104079626 0.0277470602345989 0.0469874864814001 0.0660823251629839 0.0567843328966912 -0.089651973278548 0.00796378410475527] * :Prin Data Matrix By specimen_material_type, :specimen_material_type == "eye", [0.0373396063069139 0.230664696195386 0.512508245952481 0.0771211912202765 0.102552115838519 0.0328516624565287 0.147645873926505 -0.0220060089806933 0.106127832055773 0.0388887660087035 -0.000881690433691752
	 -0.0198426054019754 0.0762297390951024 0.0078039166978775 -0.0471152985227043 0.593774008179762 -0.170869017502479 -0.113708226113662 0.133820227418733 -0.556377109748335 1.3256187250669 0.898204216297108
	 0.0572541789240763 0.513823610465856 0.0446641161167315 0.830570213060789 0.319466444747727 0.752341702486427 0.511002155994955 -0.202136766367594 0.0605407898027054 -0.0558908665183716 0.723319944968535
	 -0.0444360903373565 0.100224045427101 -0.0561517692189069 0.238934370196459 1.01080572261148 0.577594921103846 -0.336405816017908 0.0712808826453921 -0.0402225879506418 0.103441924984378 0.554727570109212
	 0.334725052871437 0.140221006869288 0.0105288459881024 -0.0140032865904578 0.0336143869948544 0.261388008724009 0.101418492908033] * :Prin Data Matrix By specimen_material_type, .)), Set Property("MDMCC Historical Statistics", {Creator("Principal Components"), Variance("on Correlations"), Number of Columns(51), Number of Observations(44), Freq(0), Variable Names({"A", "A2m", "A2ml1", "A3galt2", "A4galt", "Aa386476", "Aa387200", "Aa414768", "Aa465934", "Aa467197", "Aa543186", "Aa545190", "Aa672651", "Aa792892", "Aa986860", "Aaas", "Aacs", "Aadat", "Aaed1", "Aagab", "Aak1", "Aamdc", "Aamp", "Aar2", "Aard", "Aars", "Aars2", "Aarsd1", "Aasdh", "Aasdhppt", "Aass", "Aatf", "Aatk", "Ab041806", "Ab124611", "Abat", "Abca1", "Abca2", "Abca3", "Abca4", "Abca5", "Abca6", "Abca7", "Abca8a", "Abca8b", "Abca9", "Abca12", "Abca13", "Abca17", "Abcb1a", "Abcb1b"}), Mean([-0.40783718963311, 0.688382366020641, -0.0703818201606135, -1.74820393462455, -1.11818761674836, -1.73568946947707, -0.652766782082089, -1.31669052288985, -0.268024336861669, 0.0964787665895007, -1.83710734373927
	, -1.34361494812515, -0.735711187489235, -0.481591191820795, -0.462173834983341, -0.0480083703631927, -0.145389735985526, -0.828749310990982, -0.150374212607556, -0.309283560299806, -0.0139371405487383
	, 0.126174845916121, 0.142017977315897, 0.0376704593545365, -1.24558798298738, -0.122675457712727, -0.0971328803899685, -0.0705564637293572, -0.072825588662086, -0.358966796440352, -1.15910528309367, 0.216285772675527
	, 0.0114703709166675, -0.60284578171782, -1.13552139838923, -0.0665385225563945, 0.394191096899932, 0.0670707291115471, 0.0894457372009105, -0.240060833953281, -0.0825526516032692, -1.41890147361573, 0.00499478409660045
	, -0.143582099799744, -0.160007110997754, -0.591234081530749, -1.48821322704104, -0.974663664821759, -0.641867317470376, -0.281180175985779, -1.21367944569358]), Std([1.53726221008019, 1.32938225614806, 0.664719926876226, 2.20764723904233, 2.14150037340936, 2.24206011480269, 1.13637537571269, 1.92609849956494, 0.59228916663767, 1.60400527150785, 1.72249329675155, 0.871095542575974
	, 0.998142053556444, 1.51262797572046, 1.58011268434392, 0.420544484695392, 0.441198055016489, 0.796007326668964, 0.637992102654243, 0.376395218425519, 0.200695116158253, 0.307972126767745, 0.2161291728686
	, 0.622821594181188, 2.18159912718928, 0.314484602674856, 0.339059329725595, 0.365372891655965, 0.311830371070471, 0.57319997590322, 2.00134174776396, 0.637028380652855, 0.258762663411312, 2.19038288681871
	, 2.04821177710112, 0.479129639379324, 0.722763104473278, 0.298859501769004, 0.350164851125787, 0.348142479069789, 0.453143534605368, 2.17063765686262, 0.51287564188352, 0.399044752576719, 0.557920918594334
	, 1.20361762800511, 1.44757967888047, 2.0880624730757, 1.23699407800764, 0.673818838502342, 2.0529406740972]), Moving Range Sigma([0.995358442263065, 1.28679007522767, 0.588667359861678, 1.60363253563615, 2.37946340841644, 1.97832017094191, 0.531601504913143, 2.08343841280963, 0.482809246455553, 1.3577640571258, 1.36507860314346, 0.33021915687705
	, 0.400701992848628, 0.940215328172634, 1.27221113912839, 0.431724180812789, 0.473074076076075, 0.31059287211475, 0.697938610251227, 0.407555055389348, 0.190442442540734, 0.319068495008883, 0.243626742057498
	, 0.650824541082913, 2.29286740103198, 0.295774911472166, 0.309110956334119, 0.384814031103588, 0.295697405848018, 0.515232521156969, 2.13645095685515, 0.650302230500056, 0.235713335824498, 1.79128974747159
	, 1.57565809064977, 0.487387199392789, 0.688417929255581, 0.319771278149242, 0.358013062278678, 0.290840530405885, 0.489052661044794, 2.06266383547823, 0.454184727039903, 0.418286595886843, 0.495435959094761
	, 0.607434981852971, 1.00394433970758, 1.61172699672068, 0.432903416480771, 0.653466636146655, 1.96976990698873]), Eigenvalue([5.28302169296011, 4.17198472651602, 3.78629592090349, 3.29837512258259, 3.08028905302597, 2.85170846102648, 2.41747672482801, 2.40106352548042, 2.06299535997228, 1.99933849490573, 1.87935938017329, 1.75740571031988
	, 1.61010077428313, 1.4855936456236, 1.31486876452184, 1.22276388324241, 1.07583777417073, 0.987684367954098, 0.857783144185771, 0.783053345791664, 0.756581034864579, 0.666918515973711, 0.64830799013579
	, 0.602425669234031, 0.535420401888661, 0.46413848957734, 0.4451350037341, 0.394182871520676, 0.347272043377246, 0.322772896746522, 0.260431614913838, 0.236886534142859, 0.202218449633262, 0.18648807161058
	, 0.134186676835814, 0.114462852331721, 0.0981780264469497, 0.0881537758518295, 0.0538252935788348, 0.0470661830413543, 0.0282440076041481]), Eigenvectors(
[	0.0541963822917931 -0.20207913861926 -0.194031910253839 0.119952914928706 0.0326417214455334 0.0178837911380107 -0.0330088691620449 0.0849106654087112 0.178423323764721 -0.0788179708128093 -0.0283118695071891
	 0.0656586127970973 -0.0546923851019298 -0.180037284643406 0.208458781625378 -0.00803516420819883 -0.0174709018722529 -0.126010551227307 0.0338375540203886 0.173890526511787 0.218062053373722 -0.138123390198683
	 -0.0949039730875409 -0.198551360069395 -0.103342976897887 -0.162282273073128 0.0284061421585712 0.181943727354247 -0.0133593873254764 -0.180736735182358 -0.0780963762476103 0.139362763740702 0.104844611057689
	 -0.0888312317743458 0.135542459058657 -0.0727758522768452 -0.240853849075971 -0.119181835544975 -0.129045303437146 0.251865333711962 0.230817133694308, 
	-0.0184846174326959 0.153886302014748 0.334261368801225 0.244184399531598 -0.0640275487104931 0.0478829145137374 -0.00432675400262116 0.0140794317553505 -0.171928353194916 0.028720450357959 -0.176908474998181
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	 -0.0419569258244722 0.181648104717064 -0.0432067675427107 0.0593955920586088 -0.0254657410303846 0.0905286722274533 -0.0165246770280046 -0.201147640026585 -0.0716613449103498 -0.238473390333176 0.0984390631167033
	 -0.00932847605658202 0.0698069553449731 -0.149721899532915 0.0890761312455305 -0.0610745254474304 0.0354090144048069 0.143602585664687 0.0138631521605867, 
	-0.0618054658938034 0.276355272696944 0.00306454041489707 -0.234173102011278 0.177330000219323 -0.113195649905564 0.171848437156332 0.0445247531835446 0.286426599100219 -0.0571014480865995 0.184004175770242
	 -0.180544809141083 0.059139431641724 0.0202322268303576 0.0333968508236828 0.0680181305921454 0.137984023306412 0.0702418835168215 -0.0604091885039943 0.0163491763083809 -0.0830848970545075 0.0140491901590658
	 0.209579714569114 0.117989909163864 -0.233496297492425 -0.06516650175491 -0.0863918785261474 0.031483517540022 -0.0372908971504298 -0.064959202857542 0.277029415206427 0.244103903113129 -0.165813988898856
	 0.037688524292349 -0.117572019462969 -0.284092993176262 0.239000557411959 -0.0340499646699131 0.270678932916213 0.134231215441458 0.231504701685385, 
	0.0364610456445191 0.127893865884134 -0.106475159685254 -0.00722785298064643 0.0133075723456369 0.226327238797421 -0.215532636554482 -0.0424244966646576 0.110034413287138 -0.169941316328569 0.118877325814804
	 0.130390263821507 -0.134395036197195 0.131576518865373 0.16619047294338 0.122843339412769 0.110893842687643 0.110912588925181 -0.0555118048064504 0.088060963014692 0.163475043332451 -0.0178173322348467
	 0.0770964474424815 0.0788533280692936 0.0499282476304602 -0.0803447156072422 0.0844236262821843 0.0314584011000811 0.132826542175694 -0.104883443544966 -0.302093176342484 0.236252956771559 -0.18337684072362
	 -0.1102033418626 0.334707102230357 0.124431057450462 -0.139767195695966 -0.231199691838258 0.0242804400098799 0.0577666069319309 -0.00604996272755992, 
	0.0941846866478576 -0.0955828597399612 -0.0571938994933848 0.163349942889512 0.0409674144732821 0.126678004434679 0.0246272289854051 -0.221006182777079 0.106618648823007 0.0431197143077069 -0.0334610292405952
	 0.0869380387096822 -0.00280936517151803 0.104449332789769 0.131248940818571 0.130035888453096 -0.0746406669801059 -0.0861662894999159 0.0523755471831429 -0.152069111439042 0.0527943216530343 -0.00447877261814354
	 0.147303593670229 -0.0607308368044002 -0.0286436716415603 0.29615492363855 0.175218664880871 0.129880786666666 -0.155235719940932 0.172719583321318 -0.102475424325242 0.136019864345826 0.0735755288408215
	 0.162700414658009 -0.121662449954186 0.230619676784623 -0.0386704350955445 -0.0140924522141591 -0.176665799598949 -0.041568234301052 0.00166585549498034, 
	0.0331411436786 -0.0816350028551851 0.126123209938375 0.00143886609268607 -0.108598780157928 0.297330303224966 0.277354724279328 0.155325354916064 -0.0551384232742451 -0.0669345413939955 -0.139238010841884
	 0.174327376077825 -0.0843886856208843 0.0642384038186323 0.229179327822495 0.28710729335151 -0.129739273433987 0.0443292190360799 -0.00532798238195626 0.0497145524874486 -0.0215650853417359 0.15726659378757
	 0.102463749102665 0.176849496750439 -0.0862949307881161 0.0925265305053237 0.101008373036094 0.137447167160038 0.0617776186941644 0.00935350578242493 0.0919847037805198 0.0903129340061746 -0.0633591610665474
	 -0.193345290592141 0.0198372045882946 0.178775613958327 0.0455676114494722 0.250505653685456 0.0726958599438082 -0.245033150885976 -0.136534854272676, 
	0.232137058312464 0.0956120330164228 0.0526794484346153 0.243179725014017 0.0728816056559848 0.0568790067209687 0.158522566117876 0.126466555215707 -0.143257014872299 0.0741270263215293 -0.0676459511031556
	 -0.10687420961723 0.0966704988726605 -0.117177447792811 0.0271560778104956 0.00409441325758881 -0.0397965053934513 0.271828012261949 0.361633939862677 0.191056748756609 0.0523098557008613 0.0378493959280118
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	 -0.03717264348494 -0.0274698858012529 -0.039555030080241 0.0201217288165571 0.203825574846726 -0.112085944702139 0.207021515205529 0.11265762758125 -0.234782644419331 -0.122647334810151 -0.131248703758107
	 0.129912885098686 0.0686157168249638 0.0168323002210907 -0.0663867707786728 0.0162462530409286 0.0569539354443886 -0.15085503030828 -0.1847247294586, 
	0.0755100231595105 0.255531120938976 -0.0978154040782429 -0.0424786334329562 0.13924136471891 0.0290139373732432 0.151061768592006 -0.188365560472444 -0.319653440787693 0.251219804084322 0.0442837483509243
	 0.167825227634066 -0.122643345210942 0.0145820408445483 0.230583613941892 -0.0545888769181264 0.257729131321175 -0.0135592360801792 -0.0748381710957504 0.152278799873901 0.00539813396508821 -0.139583035361133
	 0.0310129755412842 0.154408789250443 -0.0269450884767465 -0.157432600173275 -0.109160633560728 0.0203821645458104 -0.0493642131349076 0.117156280666519 0.0909483367372967 0.111032459836109 -0.0698347782422781
	 -0.0149319623654068 -0.0644933542867454 0.0674475691991224 0.119394653529772 0.18312642131007 -0.128947681771665 -0.0237599642150612 0.176830976480044, 
	0.209661877249468 0.184964256138864 -0.0368504822037331 0.365101160028196 0.0588446545343416 0.228209512362922 0.090463694725352 0.215413815426452 0.187087140475101 0.145110631625037 -0.265360659929061
	 -0.0882547916446127 -0.0477714293146196 -0.00993647880662029 0.0583429561887966 0.0890447090067616 -0.0368298535867698 0.204086641328637 -0.0979122059922807 -0.000299363904285651 0.0862808636160865 -0.0333910743732885
	 0.0544640237591866 -0.161312450101559 0.186736797092521 -0.00402634165488655 0.151822667599973 -0.108132283063347 0.0526603131663011 0.0352859378692777 0.162702147691832 -0.0844997439439675 0.0957390826031731
	 0.273036156158056 -0.261885676789924 0.0109147874484735 0.0589531074094828 0.150107989517592 0.0806210724797229 0.103605566780611 0.116690540352958])})), New Column("Prin3 By specimen_material_type", Numeric, "Continuous", Format("Best", 12), Set Property("By ID", 363741664), Formula(If(:specimen_material_type == "not eye", [-0.0540473163977495 0.010568209477817 0.315290253978106 0.053445997656332 -0.10903397468042 -0.0290654569539251 -0.0760240677267104 0.0163457463609121 -0.0629606267528481 -0.0404981230494817 0.160830475061282
	 0.280226325566164 -0.166122635859345 0.0249159244026266 -0.0744073638721448 -0.675536128792737 0.541708093892269 -0.0427759437999161 0.424266902035473 0.35662306233048 1.15351437601919 0.118390732392532
	 0.59174735269028 -0.170956114367285 -0.00331309858468756 0.0423154972690205 0.667515148397746 -0.589897722235582 -0.136049918803676 0.191965139415353 -0.0849136917862428 0.186612291422516 0.503899063731028
	 -0.0613568691601628 0.0642397042807733 0.346859094667296 0.169963489630939 0.37105677427434 0.316743923807872 -0.159451397470294 0.194333486610114 0.0753119908408542 -0.0347400632430371 0.193202509103686
	 0.141334238314567 0.0414818182026895 -0.0555027932344142 0.0404315614933825 0.0254313271658903 0.19712500539599 -0.0510893689566014] * :Prin Data Matrix By specimen_material_type, :specimen_material_type == "eye", [0.211164035893975 -0.00224985047279214 0.0234991410909877 0.0602977187292219 0.20641298188744 0.175202756752555 -0.00809159029472949 -0.095056094642893 -0.0484298481814641 -0.156984238992855 0.108864025638519
	 -0.196796124310371 -0.000931426738609164 0.126263707865597 0.280091719509867 0.329960191674169 0.397827557967341 0.00942260745965418 0.257605693086491 -0.938661793809014 -0.927990366277237 0.806865618979402
	 1.1563823452673 0.50185578957415 -0.0431311321590864 -0.47927933409762 0.00379462219690331 -0.180235704958964 0.0205242797463916 -0.460920942998856 0.0999994984749991 0.0311941297422107 -0.857725484715446
	 0.0817834211905681 -0.0447764301261737 0.546372272351088 -0.0384369030608523 -0.378680994719527 0.262477463363927 0.244940149856749 -0.240465754067957 -0.0146206559899441 -0.329572431766294 -0.609892611018223
	 -0.562812815447039 -0.00358413616474873 0.0627190985036292 -0.025784350832213 0.02797722277042 -0.245866196335195 0.0670364439489268] * :Prin Data Matrix By specimen_material_type, .)), Set Property("MDMCC Historical Statistics", {Creator("Principal Components"), Variance("on Correlations"), Number of Columns(51), Number of Observations(44), Freq(0), Variable Names({"A", "A2m", "A2ml1", "A3galt2", "A4galt", "Aa386476", "Aa387200", "Aa414768", "Aa465934", "Aa467197", "Aa543186", "Aa545190", "Aa672651", "Aa792892", "Aa986860", "Aaas", "Aacs", "Aadat", "Aaed1", "Aagab", "Aak1", "Aamdc", "Aamp", "Aar2", "Aard", "Aars", "Aars2", "Aarsd1", "Aasdh", "Aasdhppt", "Aass", "Aatf", "Aatk", "Ab041806", "Ab124611", "Abat", "Abca1", "Abca2", "Abca3", "Abca4", "Abca5", "Abca6", "Abca7", "Abca8a", "Abca8b", "Abca9", "Abca12", "Abca13", "Abca17", "Abcb1a", "Abcb1b"}), Mean([-0.40783718963311, 0.688382366020641, -0.0703818201606135, -1.74820393462455, -1.11818761674836, -1.73568946947707, -0.652766782082089, -1.31669052288985, -0.268024336861669, 0.0964787665895007, -1.83710734373927
	, -1.34361494812515, -0.735711187489235, -0.481591191820795, -0.462173834983341, -0.0480083703631927, -0.145389735985526, -0.828749310990982, -0.150374212607556, -0.309283560299806, -0.0139371405487383
	, 0.126174845916121, 0.142017977315897, 0.0376704593545365, -1.24558798298738, -0.122675457712727, -0.0971328803899685, -0.0705564637293572, -0.072825588662086, -0.358966796440352, -1.15910528309367, 0.216285772675527
	, 0.0114703709166675, -0.60284578171782, -1.13552139838923, -0.0665385225563945, 0.394191096899932, 0.0670707291115471, 0.0894457372009105, -0.240060833953281, -0.0825526516032692, -1.41890147361573, 0.00499478409660045
	, -0.143582099799744, -0.160007110997754, -0.591234081530749, -1.48821322704104, -0.974663664821759, -0.641867317470376, -0.281180175985779, -1.21367944569358]), Std([1.53726221008019, 1.32938225614806, 0.664719926876226, 2.20764723904233, 2.14150037340936, 2.24206011480269, 1.13637537571269, 1.92609849956494, 0.59228916663767, 1.60400527150785, 1.72249329675155, 0.871095542575974
	, 0.998142053556444, 1.51262797572046, 1.58011268434392, 0.420544484695392, 0.441198055016489, 0.796007326668964, 0.637992102654243, 0.376395218425519, 0.200695116158253, 0.307972126767745, 0.2161291728686
	, 0.622821594181188, 2.18159912718928, 0.314484602674856, 0.339059329725595, 0.365372891655965, 0.311830371070471, 0.57319997590322, 2.00134174776396, 0.637028380652855, 0.258762663411312, 2.19038288681871
	, 2.04821177710112, 0.479129639379324, 0.722763104473278, 0.298859501769004, 0.350164851125787, 0.348142479069789, 0.453143534605368, 2.17063765686262, 0.51287564188352, 0.399044752576719, 0.557920918594334
	, 1.20361762800511, 1.44757967888047, 2.0880624730757, 1.23699407800764, 0.673818838502342, 2.0529406740972]), Moving Range Sigma([0.995358442263065, 1.28679007522767, 0.588667359861678, 1.60363253563615, 2.37946340841644, 1.97832017094191, 0.531601504913143, 2.08343841280963, 0.482809246455553, 1.3577640571258, 1.36507860314346, 0.33021915687705
	, 0.400701992848628, 0.940215328172634, 1.27221113912839, 0.431724180812789, 0.473074076076075, 0.31059287211475, 0.697938610251227, 0.407555055389348, 0.190442442540734, 0.319068495008883, 0.243626742057498
	, 0.650824541082913, 2.29286740103198, 0.295774911472166, 0.309110956334119, 0.384814031103588, 0.295697405848018, 0.515232521156969, 2.13645095685515, 0.650302230500056, 0.235713335824498, 1.79128974747159
	, 1.57565809064977, 0.487387199392789, 0.688417929255581, 0.319771278149242, 0.358013062278678, 0.290840530405885, 0.489052661044794, 2.06266383547823, 0.454184727039903, 0.418286595886843, 0.495435959094761
	, 0.607434981852971, 1.00394433970758, 1.61172699672068, 0.432903416480771, 0.653466636146655, 1.96976990698873]), Eigenvalue([5.28302169296011, 4.17198472651602, 3.78629592090349, 3.29837512258259, 3.08028905302597, 2.85170846102648, 2.41747672482801, 2.40106352548042, 2.06299535997228, 1.99933849490573, 1.87935938017329, 1.75740571031988
	, 1.61010077428313, 1.4855936456236, 1.31486876452184, 1.22276388324241, 1.07583777417073, 0.987684367954098, 0.857783144185771, 0.783053345791664, 0.756581034864579, 0.666918515973711, 0.64830799013579
	, 0.602425669234031, 0.535420401888661, 0.46413848957734, 0.4451350037341, 0.394182871520676, 0.347272043377246, 0.322772896746522, 0.260431614913838, 0.236886534142859, 0.202218449633262, 0.18648807161058
	, 0.134186676835814, 0.114462852331721, 0.0981780264469497, 0.0881537758518295, 0.0538252935788348, 0.0470661830413543, 0.0282440076041481]), Eigenvectors(
[	0.0541963822917931 -0.20207913861926 -0.194031910253839 0.119952914928706 0.0326417214455334 0.0178837911380107 -0.0330088691620449 0.0849106654087112 0.178423323764721 -0.0788179708128093 -0.0283118695071891
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	 -0.0888312317743458 0.135542459058657 -0.0727758522768452 -0.240853849075971 -0.119181835544975 -0.129045303437146 0.251865333711962 0.230817133694308, 
	-0.0184846174326959 0.153886302014748 0.334261368801225 0.244184399531598 -0.0640275487104931 0.0478829145137374 -0.00432675400262116 0.0140794317553505 -0.171928353194916 0.028720450357959 -0.176908474998181
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	 0.209579714569114 0.117989909163864 -0.233496297492425 -0.06516650175491 -0.0863918785261474 0.031483517540022 -0.0372908971504298 -0.064959202857542 0.277029415206427 0.244103903113129 -0.165813988898856
	 0.037688524292349 -0.117572019462969 -0.284092993176262 0.239000557411959 -0.0340499646699131 0.270678932916213 0.134231215441458 0.231504701685385, 
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	 -0.1102033418626 0.334707102230357 0.124431057450462 -0.139767195695966 -0.231199691838258 0.0242804400098799 0.0577666069319309 -0.00604996272755992, 
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	 0.0869380387096822 -0.00280936517151803 0.104449332789769 0.131248940818571 0.130035888453096 -0.0746406669801059 -0.0861662894999159 0.0523755471831429 -0.152069111439042 0.0527943216530343 -0.00447877261814354
	 0.147303593670229 -0.0607308368044002 -0.0286436716415603 0.29615492363855 0.175218664880871 0.129880786666666 -0.155235719940932 0.172719583321318 -0.102475424325242 0.136019864345826 0.0735755288408215
	 0.162700414658009 -0.121662449954186 0.230619676784623 -0.0386704350955445 -0.0140924522141591 -0.176665799598949 -0.041568234301052 0.00166585549498034, 
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	 0.174327376077825 -0.0843886856208843 0.0642384038186323 0.229179327822495 0.28710729335151 -0.129739273433987 0.0443292190360799 -0.00532798238195626 0.0497145524874486 -0.0215650853417359 0.15726659378757
	 0.102463749102665 0.176849496750439 -0.0862949307881161 0.0925265305053237 0.101008373036094 0.137447167160038 0.0617776186941644 0.00935350578242493 0.0919847037805198 0.0903129340061746 -0.0633591610665474
	 -0.193345290592141 0.0198372045882946 0.178775613958327 0.0455676114494722 0.250505653685456 0.0726958599438082 -0.245033150885976 -0.136534854272676, 
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	 0.094790079731858 -0.115959389006565 0.0243515137434735 0.0147574950036999 0.206816419757485 0.189993729731384 0.201036479890005 0.103846474241004, 
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	 0.241205678893288 0.115251054069832 -0.225279644268022 -0.0118837404850895 -0.116126564252937 -0.0704341457274085 0.0599676662018499 -0.0816713257322199 0.0849780166660677 -0.141403143324884 0.153483725130101
	 0.115178621966086 -0.0634253729752817 -0.182905526561669 0.0426227067537654 -0.276732080441226 -0.15345904169933 -0.337532137511936 0.0251780608352165 -0.0369806974022288 -0.0662189897364513 0.0179352921418012
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	 -0.0119324787001283 0.112523441054805 0.0227044524580496 0.237181188914136 0.0519486610490502 -0.0707161061249199 0.164317949196403 -0.0146139627671833 -0.00435313620678102 0.18894627637231 -0.294334210365611
	 0.0312883662307008 -0.200744723035141 0.367970026252394 -0.148546300764723 -0.0055470654231458 -0.116591345075893 0.0801564960568267 0.151506157293009, 
	-0.0936887338759349 -0.111271209750877 -0.0129625845276784 0.0868785970497008 0.0160104620139856 0.0340786978313137 -0.106014654147097 0.175635915967515 0.130254263207317 -0.219760315688324 -0.100679507211181
	 0.0937878074021215 0.0175878263093472 -0.0798428366063995 0.158296300202454 -0.0346446008264563 0.0249206787921449 0.055072852109435 -0.121888739327503 -0.189885059320669 -0.103248930259735 0.225496881582177
	 0.0859731324826552 0.0820031869320274 -0.240589343446438 -0.148856039847018 0.150431879292149 -0.201217377914723 0.0175785112578117 -0.0480525289440039 0.0187596597352647 0.171826502435592 -0.0483460156913896
	 0.366904065732237 0.0802218729330392 0.14786003613098 -0.0405151717731176 -0.0046959764446847 0.0659316162602933 0.0878647608335958 -0.132062018309938, 
	0.242117259648491 -0.0158122447864121 0.0186872861261352 -0.15518755078351 -0.160612151491524 0.153332702865404 -0.133711095501489 0.0133352264464337 0.011852808213604 -0.0291531314064014 -0.196639046311242
	 0.152202420488969 -0.292739966911999 0.194684259646043 0.0623767162099267 0.0193179444460935 -0.0199032714868862 -0.14589953317334 0.274691316102663 -0.183023065117081 0.041677307800686 0.195560082645042
	 -0.0873816222199014 0.000951706111981318 0.248936530603479 -0.108772878041949 -0.0916389024680635 0.0353308444608107 -0.0370941793988537 0.0421513589625281 0.175513601643519 0.0348412952385184 -0.173632588148639
	 -0.159615969894537 0.158836577043493 -0.231642791211744 -0.00896170517922497 0.126973095750937 0.102711102287428 0.0206667641807854 0.00906465671870951, 
	0.102348748622951 0.122241507331002 -0.108198461155474 0.0115676932791933 0.0823114026599872 0.140214774807253 0.347556448739978 0.166581790031681 0.0747100163639243 -0.0246007179903735 0.00786628106713539
	 -0.156056728037666 -0.024425085031177 0.172130122528912 0.1110053843264 -0.0915170369093265 -0.0723834653852918 0.0417822348816705 -0.136237681936209 -0.260825659029875 0.0124813647865428 0.32407626605222
	 0.199661428800499 0.0685856909999754 0.367363009123057 -0.189227522579602 -0.0878906406568556 -0.057212487884098 -0.0212806140945367 0.0358966515506878 0.0266900426891055 -0.144706139136269 0.203770498342184
	 0.0125193512039862 -0.0499281810933385 0.0975729353099167 -0.179174511591204 -0.0173544363608715 0.0279522318683661 -0.0887735192731246 0.111006053949651, 
	0.111467222471881 0.0985361239377403 0.135588709640273 0.148447143675617 0.254902372135839 0.194776123150934 0.209349982368269 -0.108147697818708 -0.109999132856614 -0.15343763839289 0.109451968413044 -0.137106799618027
	 0.112618238135525 -0.217512116311544 -0.191965126412746 0.107797677249475 0.193052816138523 -0.22636298622041 -0.166176467630013 0.0701499162682706 0.0912790901354385 -0.0968231236285698 -0.0626816731926882
	 0.0484756380959151 -0.0737292899958777 -0.107825518289918 -0.0278518575293094 -0.0678429010222617 0.104509456316114 -0.0422358664800254 -0.224011306821715 0.240959589517037 -0.0498299988665388 -0.0313571101909207
	 0.0768975222584963 0.246681983189981 -0.0411038934461041 -0.143716072510595 0.118976758283408 0.0746880442427845 -0.167589131851057, 
	0.176513522435414 -0.176971225982188 -0.0328805421695643 -0.0944044410818945 0.216203834710149 0.0890634867052734 0.0608861634570714 0.163948460393474 -0.00375873453544432 -0.0938426876545059 -0.137072575830068
	 0.172130970306341 0.174939153122873 -0.0136023124979233 -0.0032960062102703 -0.0151981192410881 0.137851938522263 -0.168758182880167 -0.0987892765694095 0.239899103596467 0.13088513141914 0.149923634208283
	 0.00126765259394174 -0.0351605827652292 -0.260486619398832 0.267170945697025 -0.155606069239814 0.0217829698724471 -0.125394496500998 0.161263867052076 0.0781789308527327 -0.131155120592832 0.0873037679936806
	 -0.296020359026121 -0.0330188693917269 0.0106827573423888 -0.117556837485012 0.110451707681117 -0.228199072127857 -0.13538497048372 0.0644577010505013, 
	-0.0184723633869473 0.0639715250366454 0.176068886838553 0.0690166040771212 0.0911758113679431 -0.375827155822254 0.180944258236646 -0.0596275086131345 0.124782251645855 -0.118736233217967 -0.116321990995514
	 -0.0703177536831582 -0.0777321115372285 -0.0892780406721481 0.0576680704113116 0.206430903902247 -0.00839226996158863 -0.0556714670978724 -0.0787947985384581 0.143428115733676 -0.0146493975782277 0.205261748103524
	 -0.090342448721791 -0.106074282144428 0.0130275016203796 -0.109205010282869 -0.0316110242188162 0.265758791586708 -0.220311597571541 0.203268895336733 0.158002714087556 0.261042718155501 -0.0914157812608587
	 -0.0565132847279191 0.00422986028128725 -0.152695657927558 0.155556281438225 0.145566283244629 0.058219614160171 0.0952941554110567 0.0181596655601211, 
	-0.0868464203986094 -0.116656778589607 0.0879743111946031 0.113241991553815 -0.358302071508696 0.0512408068579087 -0.0531121918578896 0.229831132313307 0.0995031379019857 -0.0768188466759315 -0.0415786392734297
	 -0.0133215439234082 0.0611923107679342 -0.073196115870801 0.137675192963108 0.126109259567876 0.15401564538854 -0.238306252785866 0.00975680460041616 0.109124135490749 0.141703009624495 0.0703861686733927
	 -0.00418577987631838 0.0139900595670271 -0.171203033694641 0.0501716296428067 0.00550583186218186 -0.116723107261622 -0.00332671619140953 -0.237088121202983 0.117004499998701 -0.0818998432260904 0.183674989972168
	 0.046691473239259 0.111096657449142 -0.0822766208210688 -0.156529268053743 -0.022653386128331 -0.0637092112726391 -0.224014425413495 0.0453671193073846, 
	0.159319258770785 0.0156470573787924 0.135792422066441 -0.196877456295161 0.17011868417443 0.234060079733305 -0.0860189722048615 0.101389879114029 0.365942067148539 0.162965070945499 -0.135368735839525
	 -0.0656989504310053 0.184205376104597 -0.0169926144937031 -0.0449053088695841 0.206466730340685 0.147782547677777 0.006409237129551 -0.0236823045867344 0.269371560459479 0.0229205710837718 -0.150702713638983
	 0.138312889514854 -0.163831524888941 -0.128023386492847 0.271221063804362 0.125623813085314 0.0908658319089575 -0.0741633187798935 0.120315794534632 -0.0382495465457717 0.152826618495327 0.0434756881835058
	 -0.0973363313810819 -0.0754924776981562 0.247655471734969 -0.0121341449813119 0.30469569482179 -0.253124263129837 0.0329527274239159 -0.203287054691803, 
	-0.0754081770931001 0.0305850715049538 -0.142410781116002 -0.132139433990717 -0.0340140855652183 0.237432603910838 -0.162123546786229 -0.133288695070149 0.0951579785459005 0.161486786180439 -0.209501844876385
	 0.184849328713496 -0.0114175050153291 -0.136967581991132 -0.0954986715684945 0.0531233597024609 0.282243748872803 -0.0607504124032997 0.0474337410808797 0.124638960874812 -0.074538312977069 -0.0729770166435145
	 0.12798137026373 0.15026327286967 -0.0372188593932677 -0.0961812982521292 -0.101278949897814 0.0892827658941015 0.0468307826599525 0.199732052617874 0.0701969750383325 -0.044622806445549 -0.133008559710581
	 0.0435363492248543 -0.0360910209525401 0.0427171648329919 0.122748125151809 -0.0378624217239684 0.208125509306974 0.0357578533850168 -0.247366887144938, 
	-0.0663835974478593 -0.247397941830863 0.0156853614796536 0.0714759345373905 -0.039647219192837 0.0607950581554661 0.0550978048531126 -0.0501388678763179 -0.201813344692836 -0.14453604193173 -0.144549543530576
	 0.105126621409097 -0.0580688978392869 0.0549464401765794 -0.0129057006557678 -0.0920212118832426 0.113381935188412 0.159781615146462 -0.0824288048834632 0.251073361894761 -0.0448090195750216 -0.181952613197356
	 -0.0662371149851826 0.0392779260207211 0.0885115325334098 0.244717603382577 0.150767611410541 0.135082157540404 0.153721325411526 -0.00624118817802251 0.113430609593398 0.122193262747598 -0.217251031566747
	 0.256633525664518 0.3381723034917 -0.10630978354502 0.00753119036402438 0.165506464878405 -0.238858938921167 -0.188977128297189 -0.0150763224414713, 
	0.0760291738660924 -0.0891228379751795 -0.015270010699909 0.0295420118052975 0.0548297054380047 0.276350602816102 0.0448279586126453 0.234650571414758 0.0365393405361851 0.115307348588413 -0.122672602471522
	 0.24194275753471 -0.129293632679429 0.0543812291613089 0.0298494102928859 -0.157255656499129 -0.30285529227943 -0.1686969773483 0.165224759118694 0.0486901151632057 -0.296482002067164 -0.0960293054941982
	 0.00473294148738894 0.00450660004377175 -0.00151823751323241 -0.1213370424299 -0.177992805258607 0.22467756365504 0.172765626222339 0.138243291630474 0.0518644717128195 0.114130429540486 -0.0653903771206226
	 -0.0409673438642899 0.226838636798679 -0.039247193982345 -0.0885771432680306 -0.212853213034556 -0.021254675089955 -0.133369420472155 -0.0219230165042146, 
	0.125079280090212 0.0962326726901086 0.142027573213694 0.0751773331764136 -0.0291233930585378 -0.172865559472479 0.0998065035654261 0.175066313484414 -0.0687455996874547 0.0790444482130692 0.0881119025825798
	 0.220750664916522 -0.080942160375155 0.160536068918603 0.0338533420014652 -0.145350591697949 0.0468758450412783 -0.153170355089814 0.136633387712539 -0.0314758337675302 0.213132932115778 -0.197177906743872
	 -0.191230260827244 -0.0497999425634547 -0.0461928891966957 0.0109362294116763 -0.159432605268449 -0.131223559670622 -0.287130581705852 -0.0615885821636204 0.220721121669685 0.147484429471749 -0.195737513002935
	 0.0131873260617017 0.0644423807311648 0.0485232562728002 -0.0374215424364257 0.0150174392272323 0.139026895917226 -0.163712467366827 0.108188220542158, 
	-0.0291520800017345 -0.0409370595114257 0.0248405730030109 0.0861952826957119 0.267351086194072 0.0972408789482935 -0.12113997819924 -0.130068565282882 -0.0193156035851396 0.144580206029849 0.142204416339881
	 0.23919294344058 -0.117238968424474 0.0637300584162678 0.0422035154534211 -0.0562182458977421 -0.00706338052869176 0.21633764205233 -0.128976642633274 0.0221964773681487 0.389017343391795 0.10395597261833
	 0.0465459974607798 0.398268052027162 0.251173747790496 0.11206442835867 0.318169604107398 0.0957507993034441 0.173607475807029 -0.00571709509415976 0.218499537860308 -0.0486550891442205 0.19484294436419
	 0.0591874207461616 -0.0391752682138638 0.13275180371836 -0.0658419767091127 0.0382432307608255 -0.0272711700309667 -0.0911008396038193 -0.110486218617137, 
	-0.0714986139447664 0.115192121273336 0.119666018183201 0.0996796776185175 -0.249567981616617 0.110154296667485 -0.237506790459727 -0.0747031537380389 -0.0259380758610635 0.0451338759783435 -0.0849734390340762
	 -0.11780396014252 -0.237679848102793 -0.244844116900117 -0.150436028222263 0.0315626773056485 -0.102330029230783 -0.142405495920857 0.0859519704213086 -0.0439824069538574 0.125185462963374 -0.103277350403755
	 0.1221105904233 -0.109750817552647 0.133648002337938 -0.0971233840319258 -0.0424837287303088 0.0317684011366062 -0.0989604128128978 0.0711428733080362 -0.0216893513476725 -0.05910417347083 0.0371151525089467
	 -0.0407534648205754 0.253152738028361 0.111243526335717 0.0861265011128727 -0.0628222194519472 -0.0877095323307762 0.0706786521095296 0.064762729486983, 
	-0.10010305615593 -0.10161254033093 0.128707346079385 -0.0345784320684042 -0.282872223723118 -0.126439179451118 0.275646607019104 -0.0533620254036319 0.303929072798442 -0.027920631718728 0.0983903109961408
	 0.13588990870528 -0.0677103353255429 0.0401499895671924 0.122211603154387 0.0747118543706143 -0.270266509003508 0.0159919117481891 0.135589350918952 0.0143168125195282 0.022648206843445 -0.124163291866662
	 0.0128545362735286 0.0950878666550859 0.0600773017411655 0.209445942363434 0.138559142869938 0.122469992670977 -0.222619217966286 0.287046395982621 0.0245856389665467 0.0287974652048189 -0.0179618857209099
	 -0.0916524254224162 -0.183242978688241 -0.220871167024541 -0.182268652608747 0.0558234898299495 -0.0135008638158007 -0.227536963205042 -0.14023897280481, 
	-0.0129089719120991 0.0331835356167488 0.297000047078912 -0.15847711678296 0.0834505865877192 -0.016523318081317 0.0857997953904349 -0.262604883021461 -0.0621300217980304 0.145629150097954 0.1549739126469
	 0.044579312928549 -0.112124259924382 0.199195047543175 0.0158156570475619 0.143715717220812 0.0751764294332448 -0.152154455428187 0.166129531412856 -0.0178468147698252 0.199838583335784 0.179257977793507
	 0.116456707021378 0.0562005766540474 -0.0773891654782721 -0.0593272180530805 0.0550927289521425 0.0726939490069011 0.156386743975761 -0.201512854556482 0.0283616723800488 0.227249020812275 0.0621422344070885
	 0.0489122715183448 -0.0692973663160467 -0.10997265338241 0.166878026052662 -0.175825029761063 -0.059867378416754 0.152389430880579 0.12292624461457, 
	0.155079383823097 0.0491449765289549 -0.166008478242786 -0.229063235708068 0.0158848421350488 0.0753429924134546 -0.0487092707004898 0.130735937950481 0.188938763171607 0.253245118894653 -0.20344713839051
	 -0.00832565569134006 0.212398177547842 0.0674737739618694 0.0671519616643941 -0.309630239823027 0.179503361111568 0.159206069705422 -0.261541899189244 -0.257022640427357 0.00184097507923806 -0.223522125727219
	 0.0478562337491742 -0.094007740854305 -0.119220033995302 0.0530604500307403 0.194136366610903 0.161263985676656 0.0624104050006239 -0.0339498843454091 -0.0191044486816317 -0.0152401841150819 -0.0270671811896853
	 0.129941190241422 0.0415328895447712 0.155999283592352 -0.222805776475957 -0.0643245857995819 -0.0456611166198622 0.094199866405624 0.274385974007377, 
	0.146702782964598 0.0221043588526578 0.0248071609503527 -0.00297337250851411 0.180770054483566 -0.117623215653008 -0.233306347176451 0.149207273830544 -0.172306971589381 0.0467708761215375 0.162547586411202
	 -0.0739239162434619 0.196959270259982 -0.0649324920336586 0.0925849565854381 -0.158480960841076 -0.127429620368331 -0.0180144920370198 0.0897403176167999 0.0764202205063776 -0.0996297205465297 0.28717538208009
	 -0.03717264348494 -0.0274698858012529 -0.039555030080241 0.0201217288165571 0.203825574846726 -0.112085944702139 0.207021515205529 0.11265762758125 -0.234782644419331 -0.122647334810151 -0.131248703758107
	 0.129912885098686 0.0686157168249638 0.0168323002210907 -0.0663867707786728 0.0162462530409286 0.0569539354443886 -0.15085503030828 -0.1847247294586, 
	0.0755100231595105 0.255531120938976 -0.0978154040782429 -0.0424786334329562 0.13924136471891 0.0290139373732432 0.151061768592006 -0.188365560472444 -0.319653440787693 0.251219804084322 0.0442837483509243
	 0.167825227634066 -0.122643345210942 0.0145820408445483 0.230583613941892 -0.0545888769181264 0.257729131321175 -0.0135592360801792 -0.0748381710957504 0.152278799873901 0.00539813396508821 -0.139583035361133
	 0.0310129755412842 0.154408789250443 -0.0269450884767465 -0.157432600173275 -0.109160633560728 0.0203821645458104 -0.0493642131349076 0.117156280666519 0.0909483367372967 0.111032459836109 -0.0698347782422781
	 -0.0149319623654068 -0.0644933542867454 0.0674475691991224 0.119394653529772 0.18312642131007 -0.128947681771665 -0.0237599642150612 0.176830976480044, 
	0.209661877249468 0.184964256138864 -0.0368504822037331 0.365101160028196 0.0588446545343416 0.228209512362922 0.090463694725352 0.215413815426452 0.187087140475101 0.145110631625037 -0.265360659929061
	 -0.0882547916446127 -0.0477714293146196 -0.00993647880662029 0.0583429561887966 0.0890447090067616 -0.0368298535867698 0.204086641328637 -0.0979122059922807 -0.000299363904285651 0.0862808636160865 -0.0333910743732885
	 0.0544640237591866 -0.161312450101559 0.186736797092521 -0.00402634165488655 0.151822667599973 -0.108132283063347 0.0526603131663011 0.0352859378692777 0.162702147691832 -0.0844997439439675 0.0957390826031731
	 0.273036156158056 -0.261885676789924 0.0109147874484735 0.0589531074094828 0.150107989517592 0.0806210724797229 0.103605566780611 0.116690540352958])})), Set Label Columns(:NGS library ID), Group Columns("Principal Components", :Prin1 By specimen_material_type, 3))
);
define data table;

uniquetissue = {"eye", "not eye"};
ntissue=N items(uniquetissue);
splitdt = DataTable("PCAfull NGS library ID");
sdt = splitdt << get name ; Show( sdt ) ; 
colList = splitdt << Get Column Names( numeric ) ; 
obj = splitdt <<Principal Components(
				Y( Eval( colList ) ),
				Estimation Method( "Wide" ),
				"on Correlations",
				by( :specimen_material_type ),
				Eigenvalues( 1 ),
				Summary Plots( Label variables( 0 ) ),
				Arrow Lines( 0 )
			) ; Wait( 0 ) ; 
			 obj << Save Principal Components( 3 ) ;
			 

//loop to extract eigen values from each specimen_material_type (tissue)
for(i=1,i<=ntissue,i++,
			Report( obj[i] )[Outline Box( "Wide Principal Components specimen_material_type="||uniquetissue[i] )][Outline Box( "Eigenvalues" )][Table Box( i )] <<
			Make Into Data Table ; Current Data Table() << set name( "Eigenvalues for "||uniquetissue[i] ));

ian_jmp · Jul 1, 2021 05:48 AM

// 'obj' is a list because of the use of a 'By' variable
firstByReport = Report(obj[1]);
// But 'makeCombinedDataTable' helps you out without looping
dte = firstByReport[TableBox(2)] << makeCombinedDataTable;

FYI, my browser was struggling due to the large script. Generally it's better to upload the JMP table, rather than the means to create it.

View solution in original post

ian_jmp · Jul 1, 2021 05:48 AM

// 'obj' is a list because of the use of a 'By' variable
firstByReport = Report(obj[1]);
// But 'makeCombinedDataTable' helps you out without looping
dte = firstByReport[TableBox(2)] << makeCombinedDataTable;

FYI, my browser was struggling due to the large script. Generally it's better to upload the JMP table, rather than the means to create it.

Sburel · Jun 30, 2021 03:12 PM

Perfect, worked like a charm.

Thanks also for the tip about attaching the data as a table. My browser is also struggling with the long script.

Best,

Sebastien

Problem extracting eigen value data from PCA report when using 'by'

Re: Problem extracting eigen value data from PCA report when using 'by'

Re: Problem extracting eigen value data from PCA report when using 'by'

Re: Problem extracting eigen value data from PCA report when using 'by'