Hallo,
sorry for the delay, It belongs to the work and I am on hoildays:
Question: is the optimal result of the reaction independent from the minimum result of the reaction?
Of course there i sa chemical rate law which connects both results but as long as it cannot be determined by th JMP I guess I need to answer that such results are independent, even if a lhigh value for the maximum automatically means a lower value for the minimum value. However it is not clear if there are no parameters which give a Gaussian distribution of the result.
Is there one response variable that measures the "quality" of the reaction?
Yes there is one parameter, which will be simply the ratio of the two signal intensities of the two compounds to maximize:
either compund I is maximized - and compound 2 minimized - or the other way round.
Is it a continuous variable? Are you trying to pick a winner or are you interested in understanding causal structure?
Variables are continuous. I don't know much about the possibilities of JMP. If I have the winner is fine. If there is a way to get chemical parameters - kinetics - from JMP that wood be even better. I would automatically have both results.
Most situations require sequential investigation to understand. Start with a large design space (e.g., lots of factors at bold levels) and iterate. How many experiments you will need depends on your current subject matter knowledge.
The problem is that I have 9 parameters but I only know from two more or less which influence they should have. I have already some measurements but without any special design behind. I neither know if I can use them to prepare my DOE experiment nor how (if yes).