Yes, its OK to transform the data.
Just make sure you say that it's transformed. Often in bioscience world, a log10 rather than a natural log transform is used. In JMP "log" is the same as "ln" and log10 is base 10.
but even if you show confidence intervals on the untransformed data using a log scale, the asymmetric appearing CI are still right. It's just that graph axis is scaled. Looks wonky but still right.
JMP Systems Engineer, Health and Life Sciences (Pharma)