Try the Materials Informatics Toolkit, which is designed to easily handle SMILES data. This and other helpful add-ins are available in the JMP® Marketplace
Not sure yet how to enable the Row Order you talk about in GB. Happy to hear that your future development list includes Connect Thru Missing as an option
Connect Thru Missing is currently tied to the Row Order option in Graph Builder. That is, Connect Thru Missing is on when Row Order is off and vice versa. It's only my list to make it a separate option.
Not sure yet how to enable the Row Order you talk about in GB. Happy to hear that your future development list includes Connect Thru Missing as an option