Here are my thoughts/questions:
1. I wonder how you "know" the the second temperature must be greater?
2. What are the response variables? Can the sample be measured between Regimes? Are you confident in the measurement system?
I agree with Phil in this seems like a perfect application of split-plot designs. Though there are alternatives to how to setup and execute the design. To describe it in lay terms, you have two sequential experiments. I might suggest the first regime will create the first experiment (the whole plot). This will be some type of factorial with potentially multiple samples for each treatment. Subsequently, these samples will undergo a second experiment (subplot) another factorial which will result in multiple experimental units (the reason for multiple samples per treatment is to assess and separate within treatment variation (measurement, within sample and sample-to-sample)). This will provide a design with increased precision for the whole plot and subplot and provide excellent resolution across the two regimes.
I suggest you read:
Box, G.E.P., Stephen Jones (1992), “Split-plot designs for robust product experimentation”, Journal of Applied Statistics, Vol. 19, No. 1
"All models are wrong, some are useful" G.E.P. Box