cancel
Showing results for 
Show  only  | Search instead for 
Did you mean: 
  • New to JMP? Join us Sept. 23-24 for the Early User Edition of Discovery Summit, tailor-made for new users. Register now for free!
  • Use World Cup data to build models, explore spatial relationships, and create informative visualizations in JMP. Register. July 17, 2 pm US Eastern Time.
  • Your voice matters! Tell us how you prefer to receive JMP updates, so we can tailor our communication to your needs. Take short survey.

Discussions

Solve problems, and share tips and tricks with other JMP users.
Choose Language Hide Translation Bar
LouisAltamura
Level III

Choosing the RNA-Seq modeling parameter

JMP Genomics provides three options for the ANOVA modeling parameter in the RNA-Seq Basic Analysis workflow: Poisson, Generalized Poisson, and Negative Binomial. How does one decide amongst these options? Also, I can never seem to get the Negative Binomal to work. I get the error below on various data sets:

 

ERROR: NEWRAP Optimization cannot be completed

11 REPLIES 11
LouisAltamura
Level III

Re: Choosing the RNA-Seq modeling parameter

Oh darn ... I was hoping this was built into JMP Genomics somehow.

 

Well, that sort of thing would be a good feature request.

Re: Choosing the RNA-Seq modeling parameter

Agreed, could you put it on the Wish List here so people can vote on it? Product Management looks at this list as well.

 

JMP Wish List - JMP User Community

Chris Kirchberg, M.S.2
Data Scientist, Life Sciences - Global Technical Enablement
JMP Statistical Discovery, LLC. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: [email protected]
www.jmp.com

Recommended Articles