Are you just wanting to replicate the whole design 2 additional times? From Custom Design, the easiest thing to do is just concatenate the outputted table to itself 2 times (Tables > Concatenate).
Are they really independent if they come from the same run? That suggests 0 run-to-run variability at the same treatment combinations. I would never assume that unless that has been supported with prior data. If they really are independent, the concatenated table is all you need. Otherwise, if you want to treat as repeat measures, you need to include a random block for each set of 3. An easy way to do this would be to give each run a unique ID before concatenating, then sort the concatenated runsheet by the ID. When you model the results, add the block ID as a random block to the model.
-- Cameron Willden