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AS
Level I
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| Date Registered | 05-08-2017 01:17 PM |
| Date Last Visited | 03-25-2018 04:02 PM |
| Total Messages Posted | 7 |
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03-25-2018
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Latest posts by AS
Subject Views Posted 6950 03-15-2018 11:13 AM 4628 03-15-2018 11:03 AM 5151 02-13-2018 01:35 PM 5180 02-12-2018 10:54 AM 2221 01-09-2018 02:30 PM 5029 10-04-2017 02:19 AM 5071 10-03-2017 04:48 AM -
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Activity Feed for AS
- Posted Re: Correlate Y by X Add-In on JMP Add-Ins. 03-15-2018 11:13 AM
- Posted Re: JMP add-in for statistical dot plots on JMP Blog. 03-15-2018 11:03 AM
- Posted Re: Cluster correlations analysis in JMP? on Discussions. 02-13-2018 01:35 PM
- Posted Re: Cluster correlations analysis in JMP? on Discussions. 02-12-2018 10:54 AM
- Posted Batch effect adjustment using Housekeeping Genes on Discussions. 01-09-2018 02:30 PM
- Posted Re: Survival analysis: automatic model optimization on Discussions. 10-04-2017 02:19 AM
- Posted Survival analysis: automatic model optimization on Discussions. 10-03-2017 04:48 AM
03-15-2018
11:13 AM
HI, when running the addin in JMPGenomics, most result windows pop up (I think 2 or 3) and close immediately automatically. Also in the table with the correlations I cannot open the saved scatterplots and the correlations are not coloured by value. I am using Windows 10. What are the requirements for this tool to run.
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03-15-2018
11:03 AM
Hi, very nice tool. Is it possible to rotate the graph by 90 degrees, so I can get groups on the x-axis and values on the y-axis?
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02-13-2018
01:35 PM
Thanks, Julian. I have tried your add in as well, but unfortunately the window with the matrix representation of the correlations only shows up briefly and then disappears again. I need to look into this. Can't wait to get this running, your addin seems to be very useful. I guess I would hen make a table of the correlation matix and use that as input to the "clustering" functionality. Cheers.
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02-12-2018
10:54 AM
Hi Julian, I have the same issue as Kyle (had). I do see the cluster on correlations in the Mulitvariate output, but I would need a dendrogram with that which I could not find yet. Could you please point me to the option, as to how to generate the dendrogram of the correlations, and which input data format should be used? Thank you for your consideration. Andreas
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01-09-2018
02:30 PM
Hello, starting from a txt file with count data, I am analysing RNAseq data from three different independent experiments which should be merged into a single analysis. Sample characteristics, such as disease conditions, are perfectly confounded within the batches. The use of housekeeping genes, such as those suggested by Eisenberg et al. (http://dx.doi.org/10.1016/j.tig.2013.05.010), could be one way of addressing the batch effects. Is there a way in JMP Genomics which allows specifying sets of genes which could be used to adjust the batches? Thank you so much for your time.
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10-03-2017
04:48 AM
Hello, I am interested in performing a survival analysis with gene expression data. The input would be expression data from a panel of genes, and I want to identify the group (subset) of genes with best model performance. Can JMP (or JMP Genomics) perform an automatic identification of the best model?
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