GxE Interaction analysis on genetic and environmental data use to be available in JMP Genomics. Now, the AMMI model and various graphs and tables can be produced within JMP using the attached script or JMP Workflow (put inside a JMP Project).
There are also two example data sets included to see how the JSL script and JMP Workflow works. The Workflow contains notes in the script section to describe what various variables mean.
There are not any official documentation around the script or workflow
This script is not an officially supported script by JMP. It is meant to assist people who are trying to perform these types of analyses within JMP. Please leave comments below if there are some questions or something does not seem to work.
Best,
