Try the Materials Informatics Toolkit, which is designed to easily handle SMILES data. This and other helpful add-ins are available in the JMP® Marketplace
How do I direct JMP to a file folder on my desktop that have about 400 CSV files like a database, create a bunch of columns and create a summary table with 1 row per file? I can do this individually, but it takes forever and I was hoping I could develop a script to automate.