Hi @Incr_ch22,
Great, so it was more a problem of data quality (outliers) than a problem of modeling.
A comment about the modeling: when you click on "Model" to create the analysis, please check the option "Fit Separately" (below personality and emphasis, on the right) when you have several responses before you launch the platform : you will have to sort and eliminate the terms for each response, but it will enable you to have custom models for each of your responses, which can help increase precision of your model (see screenshot attached for comparison or file with script "Model_fit-separately")).
Concerning your question, by going into "Set Desirability", you can specify different importance to your responses ; in your case, if density is very important compared to other responses, you can increase its importance. It might be difficult to have all responses sorted from high to low desirability, since some of your responses may have "conflicting interests/factors", but you can sort the output table by selecting the column "Desirability", right-click on it, click on "Sort" and then "Descending". You'll then have you simulated experiments sorted from highest overall desirability to lowest overall desirability (and if needed, you can sort on other specific response columns in the same way).
For the validation experiments, I would look at the predicted optimum and the predicted responses values, to check accuracy of the model. Other points can be selected as well, depending on your goal (check if prediction variance is homogeneous in the design or check if small variations from the optimum can still be acceptable for your process).
I'm not sure what you imply by "find something similar for the entire process" ? You can still save every individual responses prediction formula in order to map/predict the whole process ?
If you want to save all responses formulas in just one click, press CTRL + click on red triangle of one of the responses, "Save Columns", and then "Prediction Formula" (and StdErr Pred Formula to get confidence intervals for each response prediction formula).
Hope it helps you,
Victor GUILLER
"It is not unusual for a well-designed experiment to analyze itself" (Box, Hunter and Hunter)