The newer release of JMP Genomics, version 7.1, has new features tailored to improve the capabilities of the software:
The updates in the OneMap package (beginning on version 2.1.0) have effects in some R functions (functions names, and some internal routines), and they will cause errors in the Outcross Add-In of JMP Genomics up to version 9.0. The necessary fixes in JMP Genomics have already taken place to make the Outcross Add-In compatible with versions OneMap 2.1.0 and 2.1.1 (the latest OneMap version available in CRAN on April 9th, 2018). These fixes will be available in the next release of JMP Genomics. Meanwhile, please contact the Technical Support team to inquire assistance with this issue in OneMap version 2.1.0 or later. Alternatively, you can install OneMap version 2.0.4 or earlier from the the archive https://cran.r-project.org/src/contrib/Archive/onemap/. For your conveniecy, OneMap_2.0.4.zip for Windows system is avaliable for download in this webpage.