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jahndavik
Community Trekker

No Manhattan Plot when I run Q-K Mixed Model.

When I run Q-K Mixed Model with my SNP data no Manhattan Plot is generated. Does that sound like a flaw on my data or has JMP Genomics changed the output here?

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sbrlsi
Staff

Re: No Manhattan Plot when I run Q-K Mixed Model.

Hi,

JMP Genomics output for the Q-K Mixed Model has not changed, so it could be a flaw on your data. In order to dig more deep into the issue you are facing I encourage you to contact the Tech Support Team at SAS.