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Mi
Mi
Level III

JMP Genomics - Import BED BIM FAM (Plink) files

Hello,

does anyone know how I can import BIM MAC files (Plinkt) into JMP Genomics?

Or how to import MAP PED (Plink) files into JMP Genomics?

 

Thanks!

 

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Re: JMP Genomics - Import BED BIM FAM (Plink) files

HI @Mi ,

 

For PLINK, here is a direct link to JMP Genomics User Guide that explains this:

https://www.jmp.com/support/downloads/JMPG100_documentation/wwhelp/wwhimpl/js/html/wwhelp.htm#href=P... 

 

For PLINK Binary, here is the link:

https://www.jmp.com/support/downloads/JMPG100_documentation/wwhelp/wwhimpl/js/html/wwhelp.htm#href=P... 

 

Hope that helps,

Chris Kirchberg
Principal Systems Engineer, Life Sciences - JMP Global Technical Enablement
SAS Institute, Inc. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: chris.kirchberg@jmp.com
JMP – A Division of SAS Institute | www.jmp.com

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3 REPLIES 3
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Re: JMP Genomics - Import BED BIM FAM (Plink) files

Hi @Mi ,

 

You can import PLINK and PLINK binary files in JMP Genomics.

Got to the Import Category on the left, then the "Other Genetics" Subcategory in the middle, and then click on either PLINK (PED/FAM and MAP files) or PLINK Binary (PED, BIM and FAM files) button. 

Is that what you were looking for?

Best,

Chris Kirchberg
Principal Systems Engineer, Life Sciences - JMP Global Technical Enablement
SAS Institute, Inc. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: chris.kirchberg@jmp.com
JMP – A Division of SAS Institute | www.jmp.com
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Mi
Mi
Level III

Re: JMP Genomics - Import BED BIM FAM (Plink) files

Hello,

thank you for the message.
I also found this... only I don't know how  to proceed.
How does Genomics need the processing?

I convert the three files or the two files and then?
Does Genomis need the three files or the two files?

Or do they need to be concatenate into one file somehow?

Best regards

Highlighted

Re: JMP Genomics - Import BED BIM FAM (Plink) files

HI @Mi ,

 

For PLINK, here is a direct link to JMP Genomics User Guide that explains this:

https://www.jmp.com/support/downloads/JMPG100_documentation/wwhelp/wwhimpl/js/html/wwhelp.htm#href=P... 

 

For PLINK Binary, here is the link:

https://www.jmp.com/support/downloads/JMPG100_documentation/wwhelp/wwhimpl/js/html/wwhelp.htm#href=P... 

 

Hope that helps,

Chris Kirchberg
Principal Systems Engineer, Life Sciences - JMP Global Technical Enablement
SAS Institute, Inc. - Denver, CO
Tel: +1-919-531-9927 ▪ Mobile: +1-303-378-7419 ▪ E-mail: chris.kirchberg@jmp.com
JMP – A Division of SAS Institute | www.jmp.com

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