Hi @WhiteCow2000,
Here's the details from the JMP Help page for the canonical plots.:
- A 95% confidence level ellipse is plotted for each mean. If two groups differ significantly, the confidence ellipses tend not to intersect.
–An ellipse denoting a 50% contour is plotted for each group. This depicts a region in the space of the first two canonical variables that contains approximately 50% of the observations, assuming normality.
Thanks,
Ben
“All models are wrong, but some are useful”