https://community.jmp.com/t5/Discussions/Q-K-mixed-model-using-plink-files/m-p/768205#M94843 <P>Hello,</P><P>Please I need help to run&nbsp;Q-K mixed model analysis. I have flat and binary plink files. I tried to generate a .sas7bdat file with letters in genotypes. I tried to run a kinship matrix but it didn't look good (a lot of empty boxes/ In genotype columns, non empty boxes have 1/1 as a value). When I try to run any analysis, I got errors. I recoded genotypes in my raw files to 0, 1 and 2 but still not working.</P><P>Is it possible to&nbsp;run&nbsp;Q-K mixed model using plink files as input, otherwise, how can I do it knowing that these files are the only ones I have!</P><P>I appreciate your help.</P><P>&nbsp;</P> Tue, 25 Jun 2024 06:41:02 GMT Imane-Morjane 2024-06-25T06:41:02Z https://community.jmp.com/t5/Discussions/Q-K-mixed-model-using-plink-files/m-p/768205#M94843 <P>Hello,</P><P>Please I need help to run&nbsp;Q-K mixed model analysis. I have flat and binary plink files. I tried to generate a .sas7bdat file with letters in genotypes. I tried to run a kinship matrix but it didn't look good (a lot of empty boxes/ In genotype columns, non empty boxes have 1/1 as a value). When I try to run any analysis, I got errors. I recoded genotypes in my raw files to 0, 1 and 2 but still not working.</P><P>Is it possible to&nbsp;run&nbsp;Q-K mixed model using plink files as input, otherwise, how can I do it knowing that these files are the only ones I have!</P><P>I appreciate your help.</P><P>&nbsp;</P> Tue, 25 Jun 2024 06:41:02 GMT https://community.jmp.com/t5/Discussions/Q-K-mixed-model-using-plink-files/m-p/768205#M94843 Imane-Morjane 2024-06-25T06:41:02Z