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    <title>topic Re: ANOVA with Repeated Measures in Discussions</title>
    <link>https://community.jmp.com/t5/Discussions/ANOVA-with-Repeated-Measures/m-p/579687#M78694</link>
    <description>&lt;LI-SPOILER&gt;&amp;nbsp;&lt;/LI-SPOILER&gt;
&lt;P&gt;Sam, it would be helpful if you could attach JMP files vs. excel. &amp;nbsp;Here are my thoughts/comments/questions:&lt;/P&gt;
&lt;P&gt;If I understand your situation, you have 1 experimental unit (sample) for each treatment. &amp;nbsp;16 Degrees of freedom. &amp;nbsp;The two "data points" for each experimental unit are acquired by measuring the sample twice. &amp;nbsp;The reason why those two data points would vary is due to the measurement process (and possibly within sample variation). &amp;nbsp;I also assume the measurement system is not destructive, is &amp;nbsp;that correct?&lt;/P&gt;
&lt;P&gt;If this is the case, then I would plot the ranges on a range chart to estimate the stability of the measurement process. &amp;nbsp;If it is stable, certainly you can average those 2 value (which has the effect of reducing the measurement system variation (S^2/n)) and thus increasing the precision of the experiment. &amp;nbsp;If those 2 data points also capture other components of variation (e.g., within sample variation), you could also use the variance of the 2 data points as a response variable to see if the x's in your experiment causally relate. And yes, it would be a good idea to look at the correlation of the mean and range.&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;
&lt;P&gt;Sam, I have attached 2 JMP files. &amp;nbsp;&lt;/P&gt;
&lt;P&gt;RauheitStack is stacking the 2 data points for analysis. &amp;nbsp;I added two script to analyze the data.&lt;/P&gt;
&lt;P&gt;RauheitSum is the summary statistics for the 2 data points (keep in mind I did not remove or replace the unusual data points from sample 13. &amp;nbsp;I also added a multivariate and a fit model script.&lt;/P&gt;
&lt;P&gt;Now to properly analyze the data set, before you do any statistics, you need to determine if the amount of variation created in the experiment is of any practical value. &amp;nbsp;Did the response change enough? &amp;nbsp;If so proceed with analysis. &amp;nbsp;If not, why?&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;</description>
    <pubDate>Sat, 10 Dec 2022 15:13:34 GMT</pubDate>
    <dc:creator>statman</dc:creator>
    <dc:date>2022-12-10T15:13:34Z</dc:date>
    <item>
      <title>ANOVA with Repeated Measures</title>
      <link>https://community.jmp.com/t5/Discussions/ANOVA-with-Repeated-Measures/m-p/579145#M78648</link>
      <description>&lt;P&gt;Hallo, Ich&lt;SPAN&gt;&amp;nbsp;habe ein "DoE" mit 5 Faktoren eingerichtet, vier davon Stetig Werte auf 2 Ebenen haben und letzte Faktor&amp;nbsp;diskrete numerische(K) auch auf 2 Ebenen. Ich&amp;nbsp;habe 17 Sample ,jeweils wurde zwei mal getestet. Insgesamt&amp;nbsp;haben wir 34 Versuch. Ich&amp;nbsp;möchte für die ANOVA&amp;nbsp; mit Wiederholung durchführen.&lt;/SPAN&gt;&lt;/P&gt;&lt;P&gt;&lt;SPAN&gt;Ich habe die Datei angehängt, können&amp;nbsp;Sie einen Überblick werfen und mir zeitnah Antwort geben.&lt;/SPAN&gt;&lt;/P&gt;&lt;P&gt;&lt;SPAN&gt;Vielen Dank im Voraus&amp;nbsp;&lt;/SPAN&gt;&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;</description>
      <pubDate>Fri, 09 Jun 2023 00:58:22 GMT</pubDate>
      <guid>https://community.jmp.com/t5/Discussions/ANOVA-with-Repeated-Measures/m-p/579145#M78648</guid>
      <dc:creator>Sam_1991</dc:creator>
      <dc:date>2023-06-09T00:58:22Z</dc:date>
    </item>
    <item>
      <title>Re: ANOVA with Repeated Measures</title>
      <link>https://community.jmp.com/t5/Discussions/ANOVA-with-Repeated-Measures/m-p/579262#M78654</link>
      <description>&lt;P&gt;Hi,&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;
&lt;P&gt;What is the nature of the repeats? "Repeated measures" usually refers to a situation where measures are taken over time to understand how a response is changing with time. I don't think that is the case here.&amp;nbsp;&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;
&lt;P&gt;Is there any reason why you can't just take the average of the 2 repeats and analyse that as your response?&amp;nbsp;You can create an average column by selecting the 2 columns (click and drag on the column headers), then right-click &amp;gt; New Formula Column &amp;gt; Combine &amp;gt; Average.&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;
&lt;P&gt;What is the objective of the experiment? The goal is important in understanding the appropriate analysis as different models are possible. It looks like it was probably designed to test a model with all main effects and 2-factor interactions. You would do that using Fit Model from the Analyze menu like this:&lt;/P&gt;
&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Phil_Kay_0-1670581946460.png" style="width: 400px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/48078i52429FDB5CE81A48/image-size/medium?v=v2&amp;amp;px=400" role="button" title="Phil_Kay_0-1670581946460.png" alt="Phil_Kay_0-1670581946460.png" /&gt;&lt;/span&gt;&lt;/P&gt;
&lt;DIV id="tinyMceEditor_61863f3369c4dbPhil_Kay_1" class="mceNonEditable lia-copypaste-placeholder"&gt;&amp;nbsp;&lt;/DIV&gt;
&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Phil_Kay_2-1670582204114.png" style="width: 400px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/48079iC26EA59573551263/image-size/medium?v=v2&amp;amp;px=400" role="button" title="Phil_Kay_2-1670582204114.png" alt="Phil_Kay_2-1670582204114.png" /&gt;&lt;/span&gt;&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;
&lt;P&gt;I am a bit confused why you have supplied the table as an Excel file. Was the experiment designed in JMP?&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;</description>
      <pubDate>Fri, 09 Dec 2022 10:38:19 GMT</pubDate>
      <guid>https://community.jmp.com/t5/Discussions/ANOVA-with-Repeated-Measures/m-p/579262#M78654</guid>
      <dc:creator>Phil_Kay</dc:creator>
      <dc:date>2022-12-09T10:38:19Z</dc:date>
    </item>
    <item>
      <title>Re: ANOVA with Repeated Measures</title>
      <link>https://community.jmp.com/t5/Discussions/ANOVA-with-Repeated-Measures/m-p/579283#M78656</link>
      <description>&lt;P&gt;It might be a good idea to look at the correlation between the 2 repeats. For the most part they correlate well, but there is at least one (BV_11) where there is a bigger difference between repeats.&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;
&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Phil_Kay_4-1670583486370.png" style="width: 400px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/48082i3ACDF08F6EA0D8BA/image-size/medium?v=v2&amp;amp;px=400" role="button" title="Phil_Kay_4-1670583486370.png" alt="Phil_Kay_4-1670583486370.png" /&gt;&lt;/span&gt;&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;</description>
      <pubDate>Fri, 09 Dec 2022 17:41:42 GMT</pubDate>
      <guid>https://community.jmp.com/t5/Discussions/ANOVA-with-Repeated-Measures/m-p/579283#M78656</guid>
      <dc:creator>Phil_Kay</dc:creator>
      <dc:date>2022-12-09T17:41:42Z</dc:date>
    </item>
    <item>
      <title>Re: ANOVA with Repeated Measures</title>
      <link>https://community.jmp.com/t5/Discussions/ANOVA-with-Repeated-Measures/m-p/579687#M78694</link>
      <description>&lt;LI-SPOILER&gt;&amp;nbsp;&lt;/LI-SPOILER&gt;
&lt;P&gt;Sam, it would be helpful if you could attach JMP files vs. excel. &amp;nbsp;Here are my thoughts/comments/questions:&lt;/P&gt;
&lt;P&gt;If I understand your situation, you have 1 experimental unit (sample) for each treatment. &amp;nbsp;16 Degrees of freedom. &amp;nbsp;The two "data points" for each experimental unit are acquired by measuring the sample twice. &amp;nbsp;The reason why those two data points would vary is due to the measurement process (and possibly within sample variation). &amp;nbsp;I also assume the measurement system is not destructive, is &amp;nbsp;that correct?&lt;/P&gt;
&lt;P&gt;If this is the case, then I would plot the ranges on a range chart to estimate the stability of the measurement process. &amp;nbsp;If it is stable, certainly you can average those 2 value (which has the effect of reducing the measurement system variation (S^2/n)) and thus increasing the precision of the experiment. &amp;nbsp;If those 2 data points also capture other components of variation (e.g., within sample variation), you could also use the variance of the 2 data points as a response variable to see if the x's in your experiment causally relate. And yes, it would be a good idea to look at the correlation of the mean and range.&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;
&lt;P&gt;Sam, I have attached 2 JMP files. &amp;nbsp;&lt;/P&gt;
&lt;P&gt;RauheitStack is stacking the 2 data points for analysis. &amp;nbsp;I added two script to analyze the data.&lt;/P&gt;
&lt;P&gt;RauheitSum is the summary statistics for the 2 data points (keep in mind I did not remove or replace the unusual data points from sample 13. &amp;nbsp;I also added a multivariate and a fit model script.&lt;/P&gt;
&lt;P&gt;Now to properly analyze the data set, before you do any statistics, you need to determine if the amount of variation created in the experiment is of any practical value. &amp;nbsp;Did the response change enough? &amp;nbsp;If so proceed with analysis. &amp;nbsp;If not, why?&lt;/P&gt;
&lt;P&gt;&amp;nbsp;&lt;/P&gt;</description>
      <pubDate>Sat, 10 Dec 2022 15:13:34 GMT</pubDate>
      <guid>https://community.jmp.com/t5/Discussions/ANOVA-with-Repeated-Measures/m-p/579687#M78694</guid>
      <dc:creator>statman</dc:creator>
      <dc:date>2022-12-10T15:13:34Z</dc:date>
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