topic Re: Linkage Map order in Discussions

Linkage Map order

Sep6 — Wed, 26 May 2021 16:16:53 GMT

How long does it take to run Linkage map order step? This process is running for two days in my case and I even don't have a large data set.

Re: Linkage Map order

Phil_Kay — Wed, 02 Jun 2021 08:47:07 GMT

Hi,

I think that you might need to provide a bit more information to help the JMP Community to help you with this. Can you describe the data that you are looking at. I imagine data size will be important here, for example.

I assume that you are using JMP Genomics. Is that correct?

I am not an expert in JMP Genomics but I am sure that someone in the community can help if you can say a bit more about what you are trying to do.

Regards,

Phil

Re: Linkage Map order

Chris_Kirchberg — Wed, 02 Jun 2021 12:51:42 GMT

Hi @Sep6 ,

How many SNPs/Genotypes by how many samples and how many linkage groups were defined in teh Recombination and Linkage Groups process?

You can save the settings used in the Linkage Map Order dialog (see Save button at bottom of dialog) and attach to this post if there is nothing proprietary about the names of the samples and naming of the SNPs/Genotypes. The data will not be transmitted, only how each field was assigned.

Thanks,