topic Re: Scripting Y Axis to be Log scale in Discussions

Scripting Y Axis to be Log scale

Lharbicht — Fri, 06 Apr 2018 19:26:13 GMT

Hello,

I have script to make multiple histograms using stacked data. The y-axis used in the histogram is the stacked data column :Data, the x-axis used in the histogram is the stacked data column labels :Chemical Compound. Then I use Page (:Sample ID) to separate my graphs into one graph per sample. Depending on my dataset that I'm using the script for, I may have 2 samples, or 100 samples. My graphs work fine, however, I would like the y-axis to be in log scale. I've tried multiple ways of inserting code to do this, however, the most I've gotten to work is 1 graph in log scale, while the others are all linear. I've attached the code. The part that is sort of working is the 'ScaleBox (2),'. It changes the first graph to log, however, it leaves the remaining scales as linear. If I change the (2) to a (3) after 'ScaleBox' then the second graph in the group changes to log while the others remain linear. If I remove the (#) after 'ScaleBox' altogether, then none go to log. I've also tried inserting 'Left Y Log Scale (1)' into the Variables area but nothing.

I've attached a dataset to run with the script. Any help with this would be appreciated!

Thank you,

Graph Builder(
        Show Control Panel( 0 ),
	Variables( X( :Chemical Compound ), Y( :Data ), Page( :SampleID ) ),
	Elements( Bar( X, Y, Legend( 10 ) ) ),
	SendToReport(
			Dispatch(
			{},
			"Data",
			ScaleBox (2),
			{Scale( "Log" ), Format( "Best", 10 ), Min( 0.01 ), Max( 80 ), Inc( 1 ),
			Minor Ticks( 1 )}
		),
		Dispatch( {}, "400", LegendBox, {Set Title( "" )} ),
	)
);

Re: Scripting Y Axis to be Log scale

pmroz — Mon, 09 Apr 2018 12:20:20 GMT

Unfortunately you have to send the log Y axis message to each graph page. This code works but shows errors in the log. Hope someone has a cleaner solution for you.

EDIT 4-9-2018 I was looping over id_list and not unique_values. Fixed code is below.

Get_unique_values = Function( {in_list},
      {Default Local}, 
      tmp = [=> 0]; 
      Insert Into( tmp, in_list ); 
      tmp << get keys; 
); 

dt = data table("Test Data");

id_list = column(dt, "Sample ID") << get values;
unique_values = get_unique_values(id_list);

gb = dt << Graph Builder(
	Size( 530, 1460 ),
	Show Control Panel( 0 ),
	Variables( X( :Chemical Compound ), Y( :Data ), Page( :Sample ID ) ),
	Elements( Bar( X, Y, Legend( 10 ) ) ),
);

for (i = 1, i <= nitems(unique_values), i++,
	gb << SendToReport(
		Dispatch( {}, "Data", ScaleBox( i + 1 ),
			{Scale( "Log" ), Format( "Best", 10 )}
		)
	);
);

Re: Scripting Y Axis to be Log scale

gzmorgan0 — Mon, 09 Apr 2018 12:27:33 GMT

I like to use XPath(). A single message applies to all objects found. See the last 2 lines of the script below. Ther is a section and sample scripts for Xpath() and Find() in Chapter 6 of the 2nd edition of JSL Companion. You can find a simple example in the Scripting Index >Display Box > search for xpath. To learn more about XPath syntax and functions, click here

<https://www.tutorialspoint.com/xpath/xpath_quick_guide.htm>

gb = Graph Builder(
        Show Control Panel( 0 ),
	Variables( X( :Chemical Compound ), Y( :Data ), Page( :SampleID ) ),
	Elements( Bar( X, Y, Legend( 10 ) ) ),
	SendToReport(
//			Dispatch(
//			{},
//			"Data",
//			ScaleBox (2),
//			{Scale( "Log" ), Format( "Best", 10 ), Min( 0.01 ), Max( 80 ), Inc( 1 ),
//			Minor Ticks( 1 )}
//		),
		Dispatch( {}, "400", LegendBox, {Set Title( "" )} ),
	)
);

xx =gb << Xpath( "//ScaleBox[@charID='Data']");

xx << {Scale( "Log" ), Format( "Best", 10 ), Min( 0.01 ), Max( 80 ), Inc( 1 ), Minor Ticks(1) };

Re: Scripting Y Axis to be Log scale

pmroz — Mon, 09 Apr 2018 12:30:36 GMT

I didn't realize xpath could be used for this. Nice clean solution!

Re: Scripting Y Axis to be Log scale

Lharbicht — Tue, 10 Apr 2018 19:42:59 GMT

Thank you for this solution! I will checkinto this some more.

Re: Scripting Y Axis to be Log scale

Lharbicht — Wed, 22 Aug 2018 18:39:28 GMT

Hello!

I've been using this solution for my log scale graphing needs. It works great. However, if I want to graph a large number of samples (say > 50) it gives an error (see below). Has anyone run into this before? I've tried adding 'wait();' before and after and in different areas thinking my code just needed more time. It works fine for < 50 samples, anything above gives the error.

Excessive depth in document: 256 use XML_PARSE_HUGE option

in access or evaluation of 'Xpath' , Xpath( "//ScaleBox[@charID='Rel TEQ']" ) /*###*/

Here's my code.

dtstacked3:Parameter3 << set property( "Row Order Levels", 1 );
dtstacked3:Sample ID << set property ("Row Order Levels",1);
gb3 = dtstacked3 << Graph Builder(
	Show Control Panel( 0 ),
	Variables( X( :Parameter3 ), Y( :Rel TEQ ), Page( :Sample ID ), Color( :Rel TEQ 2 ) ),
	Elements( Bar( X, Y, Legend( 6 ) ) ),
	SendToReport(
		Dispatch( {}, "400", ScaleBox, {Legend Model( 6, Properties( 0, {gradient(
						{Color Theme(
							{"Paired Copy 2 2502", 8193, {{254, 207, 132}, {254, 207,
							132}, {254, 207, 132}, {254, 207, 132}, {254, 207, 132},
							{254, 207, 132}, {114, 171, 187}, {114, 171, 187}, {114,
							171, 187}, {114, 171, 187}, {114, 171, 187}}}
						), Scale Values( [0 1] ), Width( 12 ), Discrete Colors( 1 )}
					)}) )} ),
		Dispatch( {}, "400", LegendBox, {Set Title( "" )} )
	)
);

xx3 = gb3 << Xpath("//ScaleBox[@charID='Rel TEQ']");
xx3 << {Scale("Log"), Format("Best", 10), Min(0.1), Max(80), Inc(1), Minor Ticks(1)};

gb3 << on close( Close( dtstacked3, nosave ) );

Thanks!

Lacey