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    <title>topic Re: Question in regards to Tukey's Multiple Comparisons Test in Discussions</title>
    <link>https://community.jmp.com/t5/Discussions/Question-in-regards-to-Tukey-s-Multiple-Comparisons-Test/m-p/47529#M27101</link>
    <description>&lt;P&gt;You can use a two-way-ANOVA the following way:&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;1. Main Menu =&amp;gt; Analyze&lt;/P&gt;&lt;P&gt;2. Fit Model&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Fit Model Dialog (I like to use &amp;quot;Minimal Report&amp;quot;)" style="width: 999px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/8381i076BEBDF3455F3B6/image-size/large?v=v2&amp;amp;px=999" role="button" title="Dialog.PNG" alt="Fit Model Dialog (I like to use &amp;quot;Minimal Report&amp;quot;)" /&gt;&lt;span class="lia-inline-image-caption" onclick="event.preventDefault();"&gt;Fit Model Dialog (I like to use "Minimal Report")&lt;/span&gt;&lt;/span&gt;&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;3. In the fit-model dialog: Y is CFU&lt;/P&gt;&lt;P&gt;4. Select Farming System and Day =&amp;gt; Macros =&amp;gt; Factorial to Degree&lt;/P&gt;&lt;P&gt;5. Run&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;Then go to the main Hotspot (red triangle) next to&lt;STRONG&gt; Response CFU&lt;/STRONG&gt; and select Estimates =&amp;gt; Multiple Comparisons.&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="tuckey.PNG" style="width: 324px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/8382iD9707F7D77CFBD24/image-size/medium?v=v2&amp;amp;px=400" role="button" title="tuckey.PNG" alt="tuckey.PNG" /&gt;&lt;/span&gt;&lt;/P&gt;&lt;P&gt;Select the interaction term and "All Pairwise Comparisons - Tukey HSD". That will give you some tables and graphs to figure oput which groups are significantly different.&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;Hope that helps,&lt;/P&gt;&lt;P&gt;Sebastian&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;</description>
    <pubDate>Wed, 22 Nov 2017 12:59:55 GMT</pubDate>
    <dc:creator>shoffmeister</dc:creator>
    <dc:date>2017-11-22T12:59:55Z</dc:date>
    <item>
      <title>Question in regards to Tukey's Multiple Comparisons Test</title>
      <link>https://community.jmp.com/t5/Discussions/Question-in-regards-to-Tukey-s-Multiple-Comparisons-Test/m-p/47523#M27098</link>
      <description>&lt;P&gt;Hi there,&lt;/P&gt;&lt;P&gt;Would anyone be able to tell me how to go about running a Tukey's multiple comparisons test on my data? I've collected soils samples from 3 farming systems (n=3) on day 0, 14, and 28. I'm measured the cfu. I'm trying determine whether or not there's&amp;nbsp; a signifacant difference between the 3 farming systems on each collection date. I know there's no sig. dif. on day zero and I'm pretty sure there's a sig. dif. between the farming systems on day 14 and 28, I'm just not sure how to go about running the stat. analysis to prove that. I've inserted a photo of a graph and my data. Any help will be greatly appreciated!&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;Ana (my apologies if I posted this message in the wrong place)&lt;/P&gt;&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Untitled-1.jpg" style="width: 978px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/8379iDDD225F9F1EE88D9/image-size/large?v=v2&amp;amp;px=999" role="button" title="Untitled-1.jpg" alt="Untitled-1.jpg" /&gt;&lt;/span&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Untitled-2.jpg" style="width: 732px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/8380iE50FD43B0CD7AE40/image-size/large?v=v2&amp;amp;px=999" role="button" title="Untitled-2.jpg" alt="Untitled-2.jpg" /&gt;&lt;/span&gt;&lt;/P&gt;</description>
      <pubDate>Wed, 22 Nov 2017 11:09:45 GMT</pubDate>
      <guid>https://community.jmp.com/t5/Discussions/Question-in-regards-to-Tukey-s-Multiple-Comparisons-Test/m-p/47523#M27098</guid>
      <dc:creator>ana</dc:creator>
      <dc:date>2017-11-22T11:09:45Z</dc:date>
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    <item>
      <title>Re: Question in regards to Tukey's Multiple Comparisons Test</title>
      <link>https://community.jmp.com/t5/Discussions/Question-in-regards-to-Tukey-s-Multiple-Comparisons-Test/m-p/47529#M27101</link>
      <description>&lt;P&gt;You can use a two-way-ANOVA the following way:&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;1. Main Menu =&amp;gt; Analyze&lt;/P&gt;&lt;P&gt;2. Fit Model&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Fit Model Dialog (I like to use &amp;quot;Minimal Report&amp;quot;)" style="width: 999px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/8381i076BEBDF3455F3B6/image-size/large?v=v2&amp;amp;px=999" role="button" title="Dialog.PNG" alt="Fit Model Dialog (I like to use &amp;quot;Minimal Report&amp;quot;)" /&gt;&lt;span class="lia-inline-image-caption" onclick="event.preventDefault();"&gt;Fit Model Dialog (I like to use "Minimal Report")&lt;/span&gt;&lt;/span&gt;&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;3. In the fit-model dialog: Y is CFU&lt;/P&gt;&lt;P&gt;4. Select Farming System and Day =&amp;gt; Macros =&amp;gt; Factorial to Degree&lt;/P&gt;&lt;P&gt;5. Run&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;Then go to the main Hotspot (red triangle) next to&lt;STRONG&gt; Response CFU&lt;/STRONG&gt; and select Estimates =&amp;gt; Multiple Comparisons.&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="tuckey.PNG" style="width: 324px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/8382iD9707F7D77CFBD24/image-size/medium?v=v2&amp;amp;px=400" role="button" title="tuckey.PNG" alt="tuckey.PNG" /&gt;&lt;/span&gt;&lt;/P&gt;&lt;P&gt;Select the interaction term and "All Pairwise Comparisons - Tukey HSD". That will give you some tables and graphs to figure oput which groups are significantly different.&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;Hope that helps,&lt;/P&gt;&lt;P&gt;Sebastian&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;</description>
      <pubDate>Wed, 22 Nov 2017 12:59:55 GMT</pubDate>
      <guid>https://community.jmp.com/t5/Discussions/Question-in-regards-to-Tukey-s-Multiple-Comparisons-Test/m-p/47529#M27101</guid>
      <dc:creator>shoffmeister</dc:creator>
      <dc:date>2017-11-22T12:59:55Z</dc:date>
    </item>
    <item>
      <title>Re: Question in regards to Tukey's Multiple Comparisons Test</title>
      <link>https://community.jmp.com/t5/Discussions/Question-in-regards-to-Tukey-s-Multiple-Comparisons-Test/m-p/47578#M27121</link>
      <description>Thank you SO much Sebastian! I really appreciate you taking the time to work out the steps. Ana</description>
      <pubDate>Thu, 23 Nov 2017 10:34:58 GMT</pubDate>
      <guid>https://community.jmp.com/t5/Discussions/Question-in-regards-to-Tukey-s-Multiple-Comparisons-Test/m-p/47578#M27121</guid>
      <dc:creator>ana</dc:creator>
      <dc:date>2017-11-23T10:34:58Z</dc:date>
    </item>
    <item>
      <title>Re: Question in regards to Tukey's Multiple Comparisons Test</title>
      <link>https://community.jmp.com/t5/Discussions/Question-in-regards-to-Tukey-s-Multiple-Comparisons-Test/m-p/208225#M41860</link>
      <description>&lt;P&gt;Hello and thank you for this explanation.&lt;/P&gt;&lt;P&gt;I had the same problem (ANOVA + Tukey, with weights in mices depending on the treatment).&lt;/P&gt;&lt;P&gt;However, can you help me to interpret the significant differences between the groups for each time?&lt;/P&gt;&lt;P&gt;what data should I look at for each week?&lt;/P&gt;&lt;P&gt;Thank you.&amp;nbsp;&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;To be clearer, I would like to know the p-value between each group for each week&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Annotation 2019-05-14 103303.png" style="width: 870px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/17202i86381D8C50E4AB81/image-size/large?v=v2&amp;amp;px=999" role="button" title="Annotation 2019-05-14 103303.png" alt="Annotation 2019-05-14 103303.png" /&gt;&lt;/span&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Annotation 2019-05-14 103735.png" style="width: 840px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/17212iA4FDFCEDA252702E/image-size/large?v=v2&amp;amp;px=999" role="button" title="Annotation 2019-05-14 103735.png" alt="Annotation 2019-05-14 103735.png" /&gt;&lt;/span&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Annotation 2019-05-14 103522.png" style="width: 327px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/17208i53814924066CD1F3/image-size/medium?v=v2&amp;amp;px=400" role="button" title="Annotation 2019-05-14 103522.png" alt="Annotation 2019-05-14 103522.png" /&gt;&lt;/span&gt;&lt;/P&gt;&lt;P&gt;PS: I had no choice but to select the treatment on multiple comparisons&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;[EDIT] : Problem resolved. My variables (week) was not in "nominal".&lt;/P&gt;</description>
      <pubDate>Thu, 16 May 2019 09:51:26 GMT</pubDate>
      <guid>https://community.jmp.com/t5/Discussions/Question-in-regards-to-Tukey-s-Multiple-Comparisons-Test/m-p/208225#M41860</guid>
      <dc:creator>Leycoste</dc:creator>
      <dc:date>2019-05-16T09:51:26Z</dc:date>
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