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    <title>topic Confirmation of Repeated Measures Analysis, when sphericity if voilated in Discussions</title>
    <link>https://community.jmp.com/t5/Discussions/Confirmation-of-Repeated-Measures-Analysis-when-sphericity-if/m-p/46286#M26371</link>
    <description>&lt;P&gt;Hi Everyone,&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;&amp;nbsp; &amp;nbsp;I would like confirmation on the appropriate analysis to run on a repeated measures design.&lt;/P&gt;&lt;P&gt;Experimental design:&lt;/P&gt;&lt;P&gt;Independent variable: Nutrient treatment (Control, Low, Med, High),&lt;/P&gt;&lt;P&gt;Dependent variable: basal diameter, 5 replicates (plants)&lt;/P&gt;&lt;P&gt;Repeated measurements were&amp;nbsp;taken at Weeks 0, 1, 4, 7, 10, &amp;amp; 12&lt;/P&gt;&lt;P&gt;Split data-&amp;gt; Fit Model-&amp;gt; Y: basal 0, basal 1, 4, 7, 10, 12, Add: Nutrient treatment&lt;/P&gt;&lt;P&gt;Personality: Manova, Choose response: repeated measures&lt;/P&gt;&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Manova.png" style="width: 307px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/8105i23A66B656DF9B1C9/image-dimensions/307x383?v=v2" width="307" height="383" role="button" title="Manova.png" alt="Manova.png" /&gt;&lt;/span&gt;&lt;/P&gt;&lt;P&gt;From Mauchly Sphericity Test I see my data is violating the assumption of sphericity making the F tests in the univariate analysis of variance unreliable.&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;Therefore, I am now attempting to make adjustments to the univariate test statistics by analyzing the data using&amp;nbsp;&lt;/P&gt;&lt;P&gt;Stacked data -&amp;gt;Fit Model-&amp;gt; Y: basal, Add: nutrient treatment, time, Nutrient treatment * Time&lt;/P&gt;&lt;P&gt;Personality: Standard Least Squares, Emphasis: Minimal Report&lt;/P&gt;&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="ANOVA.png" style="width: 384px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/8114i69C1BBF16282E111/image-dimensions/384x455?v=v2" width="384" height="455" role="button" title="ANOVA.png" alt="ANOVA.png" /&gt;&lt;/span&gt;&lt;/P&gt;&lt;P&gt;Now I can see there was no significant difference in basal diameter between nutrient treatment, but there was a significant difference in basal diameter between time points. If anyone has any feedback or suggestions please let me know and thank you all for your time.&lt;/P&gt;&lt;P&gt;Sincerely,&lt;/P&gt;&lt;P&gt;Ursula aka Struggling Graduate Student&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;P.s. I also have measurements of shoot height, and the number of leaves (for 9 different species), but I'm looking at each variable independently and not looking for comparisons&amp;nbsp;between species.&amp;nbsp;&lt;/P&gt;</description>
    <pubDate>Mon, 23 Oct 2017 15:07:50 GMT</pubDate>
    <dc:creator>uamiller</dc:creator>
    <dc:date>2017-10-23T15:07:50Z</dc:date>
    <item>
      <title>Confirmation of Repeated Measures Analysis, when sphericity if voilated</title>
      <link>https://community.jmp.com/t5/Discussions/Confirmation-of-Repeated-Measures-Analysis-when-sphericity-if/m-p/46286#M26371</link>
      <description>&lt;P&gt;Hi Everyone,&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;&amp;nbsp; &amp;nbsp;I would like confirmation on the appropriate analysis to run on a repeated measures design.&lt;/P&gt;&lt;P&gt;Experimental design:&lt;/P&gt;&lt;P&gt;Independent variable: Nutrient treatment (Control, Low, Med, High),&lt;/P&gt;&lt;P&gt;Dependent variable: basal diameter, 5 replicates (plants)&lt;/P&gt;&lt;P&gt;Repeated measurements were&amp;nbsp;taken at Weeks 0, 1, 4, 7, 10, &amp;amp; 12&lt;/P&gt;&lt;P&gt;Split data-&amp;gt; Fit Model-&amp;gt; Y: basal 0, basal 1, 4, 7, 10, 12, Add: Nutrient treatment&lt;/P&gt;&lt;P&gt;Personality: Manova, Choose response: repeated measures&lt;/P&gt;&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="Manova.png" style="width: 307px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/8105i23A66B656DF9B1C9/image-dimensions/307x383?v=v2" width="307" height="383" role="button" title="Manova.png" alt="Manova.png" /&gt;&lt;/span&gt;&lt;/P&gt;&lt;P&gt;From Mauchly Sphericity Test I see my data is violating the assumption of sphericity making the F tests in the univariate analysis of variance unreliable.&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;Therefore, I am now attempting to make adjustments to the univariate test statistics by analyzing the data using&amp;nbsp;&lt;/P&gt;&lt;P&gt;Stacked data -&amp;gt;Fit Model-&amp;gt; Y: basal, Add: nutrient treatment, time, Nutrient treatment * Time&lt;/P&gt;&lt;P&gt;Personality: Standard Least Squares, Emphasis: Minimal Report&lt;/P&gt;&lt;P&gt;&lt;span class="lia-inline-image-display-wrapper lia-image-align-inline" image-alt="ANOVA.png" style="width: 384px;"&gt;&lt;img src="https://community.jmp.com/t5/image/serverpage/image-id/8114i69C1BBF16282E111/image-dimensions/384x455?v=v2" width="384" height="455" role="button" title="ANOVA.png" alt="ANOVA.png" /&gt;&lt;/span&gt;&lt;/P&gt;&lt;P&gt;Now I can see there was no significant difference in basal diameter between nutrient treatment, but there was a significant difference in basal diameter between time points. If anyone has any feedback or suggestions please let me know and thank you all for your time.&lt;/P&gt;&lt;P&gt;Sincerely,&lt;/P&gt;&lt;P&gt;Ursula aka Struggling Graduate Student&lt;/P&gt;&lt;P&gt;&amp;nbsp;&lt;/P&gt;&lt;P&gt;P.s. I also have measurements of shoot height, and the number of leaves (for 9 different species), but I'm looking at each variable independently and not looking for comparisons&amp;nbsp;between species.&amp;nbsp;&lt;/P&gt;</description>
      <pubDate>Mon, 23 Oct 2017 15:07:50 GMT</pubDate>
      <guid>https://community.jmp.com/t5/Discussions/Confirmation-of-Repeated-Measures-Analysis-when-sphericity-if/m-p/46286#M26371</guid>
      <dc:creator>uamiller</dc:creator>
      <dc:date>2017-10-23T15:07:50Z</dc:date>
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